Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3053 ATGTCTTCATTAATCAATGGTCGCAAACCAAGTGAAATCTACAAAGCACAAGCTTTATTATACAAACACATATATGCTTTCATAGATTCCATGTCTCTAAAATGGACAGTTGAAATGAACATACCAAACATTATCCACAATCATGGCAAACCAATTTCACTATCAAACTTACTCTCAATTCTTAAAGTTCCATCATCGAAATGCGGTAACGTGCAACGTATCATGCGTTACCTCGCGCACAACGGATTCTTCGAGATAATAAAAACTCAAGAATTTGAAAATGATGAAGAAGCCTATGCTCTAACTGTTGCTTCAGAGCTTCTTGTTAAAGGAAGTGAACTTTGTTTAGCTCCAATGGTTGAATGTGTTCTTGATTCACTCTTTCGTTCGTATCATGAGATGAAAAAGTGGATTTATGAGGAAGATCTTACACTCTTTGGTGTTACTTTAGGAGCTGGATTTTGGGATTTTCTTGAAAAAAATCCTGGTTATAATAAATCATTTAATGAAGCTATGGCTAGTGATTCTAAAATGATAAATTTAGCATTGAGAGATTGTGATTTTGTGTTTGAAGGGTTAGAATCAATTGTTGATGTTGGTGGTGGAACAGGAACAACTGCTAAGATTATTTGTGAGAGATTTCCTAAGTTGAAATGTGTTGTGTTTGATAAACCAATGTTAGGGAAAGTTTGTGATCAAAGTGACAATTTGACTTATGTTGGTGGAGACATGTTCCAATCTATTCCTAATGGTGATTCTGTTCTTCTTAAGTGGATTTTACACAATTGGATTGATAAGGATTGCATAAGGATACTGAAAAAATGTAAAGAAGCTGTTACAAGTGATGGGAAAAAAGGAAAAGTGATTATTATAGATATGGTGATAAACGAAAAGAAAGATGAGAACCAAATTACTCAAGTAAAGCTTCTTATGGATGTAAACATGGCTTCTCTTAATGGAAAAGAGAGAAATGAGGATGAATGGAAGAAACTCTTCAAAGAAGCAGGATTTCAAGACTATAAAATATCTCCTTTGACTGGATATTTGTCTCTTATTGAGATCTATCCCTAA 1071 0.3389 MSSLINGRKPSEIYKAQALLYKHIYAFIDSMSLKWTVEMNIPNIIHNHGKPISLSNLLSILKVPSSKCGNVQRIMRYLAHNGFFEIIKTQEFENDEEAYALTVASELLVKGSELCLAPMVECVLDSLFRSYHEMKKWIYEEDLTLFGVTLGAGFWDFLEKNPGYNKSFNEAMASDSKMINLALRDCDFVFEGLESIVDVGGGTGTTAKIICERFPKLKCVVFDKPMLGKVCDQSDNLTYVGGDMFQSIPNGDSVLLKWILHNWIDKDCIRILKKCKEAVTSDGKKGKVIIIDMVINEKKDENQITQVKLLMDVNMASLNGKERNEDEWKKLFKEAGFQDYKISPLTGYLSLIEIYP* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3053 356 Gene3D Vaccinia Virus protein VP39 110 356 IPR029063 -
Tpr6g3053 356 Gene3D - 2 108 IPR036388 -
Tpr6g3053 356 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 2 355 - -
Tpr6g3053 356 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 120 354 IPR029063 -
Tpr6g3053 356 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 356 IPR016461 GO:0008168
Tpr6g3053 356 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Tpr6g3053 356 Pfam O-methyltransferase domain 131 338 IPR001077 GO:0008171
Tpr6g3053 356 PIRSF O-mtase 1 356 IPR016461 GO:0008168
Tpr6g3053 356 PANTHER O-METHYLTRANSFERASE 2 355 IPR016461 GO:0008168
Tpr6g3053 356 SUPERFAMILY "Winged helix" DNA-binding domain 10 112 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3053 Tpr-Chr6 33166514 33169829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3053 10 354 Monolignol Biosynthesis Gene Families AT5G54160 29.775 6.06e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3053 K22588 K13262 ag:AAC49926 600.512