Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3052 ATGGCTTCCAACAACAAAAACATTAAAATCCATGAACACTTCAAAGTTGTTCCTCCACCATCATCAACCCAAACATCAACAACACCTCTCACTTTCTTTGACATATTTTGGCTAAGGTTTCATCCGGTAGAAAGAATCTTCTACTACACCCTCCCAAATTCACAATCACACCCTTCTTTTTTCTACCAAAATATTGTTCCAAAACTCAAAACCTCACTTTCTTTAACCCTCCAACACTTTCTACCTTTAGCCGGTAAAATCATTTGGCCTTCTGATTCTCCCAAGCCATTCATTCAATTCAATCCCAATGATGATGACGGTGTTTCATTGCTCATAGCAGAGTCTGATTCAGATTTCAACCATGTCATTGAAAATTCACCCCATGAAGCTTCTTTGTCTCATTCTTTTGTACCTCACTTAGAATCAACAGATTCTTTTGCTTCTATTATCTCATTTCAAATAACCTTTTTTCCAAAAAGTGGTTTTTCCATTGGATTAAGCACACACCATGCTGTTCTTGATGGAAAATCTTCAACTTTGTTCATCAAAGCTTGGGCTTATCTATGCAACAAAATCATCGAAACCGAAGAATCGCCAATTTTGTTGCCAAAGTTACAACCTTCATTCGACAGGGAAATCATCAAAGATCAAAACGGACTTGGTGATTCATTCACAAGTAACTGGATCGAGATCATGGCCAAAATGTTCCCAAATGAAAAAGGAAACGAACGATGCTTGAAGATTTTACCTTTTCAACCAAAACTAGATGACTATGTTCGTGCTACATTCGAGCTTACACGAGAAAATTTGAGTACGATAAAGCAAATGGTGTTATCCAAATGGGAAATATTTGATACAAATGAATCAAAGCCTCAAACACTATCATCTTTTGTTCTCACTTGTGCTTATTCGCTTGTTTGTCTTGCAAAAGCAATTCATGGAGTTGAAAACGAGAAAGAAAAATTTGCTTTTGCTTTCACCGTAGATTGTAGAGCAAGGTTAGAGCCACCAATACCAAATAACTATTTTGGAAATTGTGTATGGGGAAATTTTGTTGATACAAAACCATATGATTTCATAAATGAAGATGGAGTGTTTTTAGTTGCTAAGAGCATTCATGAGAAAATAGTGACGATAAACGAAAAAGGTCCTCTTGAAGGAACTAATGGTGCGTTTGATAAATATATGTCTATGGCAAGTGAAGGAATTGAAATTATCGGAGTGGCGGGGTCTAACAGATTTGGTGTTTATGAAATTGATTTTGGTTGGGGAAGGCCGGAAAAGGTGGAGATAGTATCAGTTGATAGAGGTTCAACCATTGGTTTGGCTGAGAGCAAAAATGGCAAAGGTGGAATTGAAGTTGGGTTGGTTCTTAATAGACATGCCATGGATCTCTTTAGCACTTTGTTTCTTGAAGGTTTGCATTAA 1428 0.369 MASNNKNIKIHEHFKVVPPPSSTQTSTTPLTFFDIFWLRFHPVERIFYYTLPNSQSHPSFFYQNIVPKLKTSLSLTLQHFLPLAGKIIWPSDSPKPFIQFNPNDDDGVSLLIAESDSDFNHVIENSPHEASLSHSFVPHLESTDSFASIISFQITFFPKSGFSIGLSTHHAVLDGKSSTLFIKAWAYLCNKIIETEESPILLPKLQPSFDREIIKDQNGLGDSFTSNWIEIMAKMFPNEKGNERCLKILPFQPKLDDYVRATFELTRENLSTIKQMVLSKWEIFDTNESKPQTLSSFVLTCAYSLVCLAKAIHGVENEKEKFAFAFTVDCRARLEPPIPNNYFGNCVWGNFVDTKPYDFINEDGVFLVAKSIHEKIVTINEKGPLEGTNGAFDKYMSMASEGIEIIGVAGSNRFGVYEIDFGWGRPEKVEIVSVDRGSTIGLAESKNGKGGIEVGLVLNRHAMDLFSTLFLEGLH* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3052 475 Gene3D - 254 475 IPR023213 -
Tpr6g3052 475 SUPERFAMILY CoA-dependent acyltransferases 290 437 - -
Tpr6g3052 475 Gene3D - 7 239 IPR023213 -
Tpr6g3052 475 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 5 475 - -
Tpr6g3052 475 Pfam Transferase family 15 467 - -
Tpr6g3052 475 PANTHER - 5 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3052 Tpr-Chr6 33158637 33160387 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3052 8 472 Monolignol Biosynthesis Gene Families AT5G48930 22.541 4.34e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3052 - - gmx:100815354 610.527