Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3049 ATGAATAAGAATTCAAAAGAAGCTGAATTTCCATTGAAACAAGAAGTTCCTCATAATTCAAATGATCAACATGAAAAAGAAAAAGCTTCACCATCATCAAGTTCCTTAGCTTCATCTTCATCACAATGGCCAAGATTGAAAGATCCAAGAATTGTTAGAGTATCAAGAGCCTTTGGTGGAAAAGATAGACATAGCAAAGTTTGCACAATAAGAGGATTAAGAGATAGAAGAGTAAGGCTTTCAGTTCCAACAGCTATTCAACTTTATGATCTACAAGATAGATTAGGGCTTAATCAACCTAGCAAAGTTGTTGATTGGTTACTTAATGCAGCTAAACAAGAAATTGATCAACTTCCACCACTTCCTAATTTTCCACCTATTGGAACAAATTTCAATTTTGGTTTTCCATCTTCTAATGAAACCAGCACCAACACTTCTCATCTTCATCAACAATTGTTGAATTTCAATAGGAACAACAATATTCATTGGGAAGGTTCAACTTCAAGTCAAAATTCTAGTTGGAAATTAAACCCTAAAGAAGTTTCAAGAGAAATGGTTAGTGAAAAACCAAATTATTGGATGAATAGAAGTACTCAAGAAGAGGAAAATAACAAGCAAGGAAGCAATATTGAAGGTACTAGTCCTAGTGCAATTGTTTTGCAAAATAATAATAATTTGTTACAAAGACCAAATCACCCTTCATTTCTTGGTTTGTTAAATACTATGCCACTTGGTACTAATTACAATTGGGGAGGAGCTTCTTCTAATGATGTTGTTAATTCTTCTCAATTGGGAGGTAATATTGGTTTAATTACAAACCAACATGATGGTAATGCAATTACATCTTTGCCACCAATGTTATCTTTATCAACTGGAAATTCTTCTCAAATGTTGTTAGGAACATCTCAATCATATTTTTCTTCAAATGTTAATGCAATGGAGATGGATCATCATCATCAACATCAAAGAGAAATCAACAGTCTTCATTATCATCAGATGTTGAGTTCATCAAATTCTCAAAATCCATTGAATAATTCTCTTAATAATCCTTCCTTTAGTTTGGCTATGATGAGTACTCCCAAGTTTCTACCAAGCAGCAGAGAAAATACATCCAATAAAGAACAAGATTTCAATCCAAAGTGA 1143 0.3281 MNKNSKEAEFPLKQEVPHNSNDQHEKEKASPSSSSLASSSSQWPRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKQEIDQLPPLPNFPPIGTNFNFGFPSSNETSTNTSHLHQQLLNFNRNNNIHWEGSTSSQNSSWKLNPKEVSREMVSEKPNYWMNRSTQEEENNKQGSNIEGTSPSAIVLQNNNNLLQRPNHPSFLGLLNTMPLGTNYNWGGASSNDVVNSSQLGGNIGLITNQHDGNAITSLPPMLSLSTGNSSQMLLGTSQSYFSSNVNAMEMDHHHQHQREINSLHYHQMLSSSNSQNPLNNSLNNPSFSLAMMSTPKFLPSSRENTSNKEQDFNPK* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3049 380 ProSiteProfiles TCP domain profile. 60 118 IPR017887 -
Tpr6g3049 380 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 370 IPR005333 GO:0003700
Tpr6g3049 380 MobiDBLite consensus disorder prediction 1 44 - -
Tpr6g3049 380 MobiDBLite consensus disorder prediction 30 44 - -
Tpr6g3049 380 Pfam TCP family transcription factor 60 203 IPR017887 -
Tpr6g3049 380 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 1 370 - -
Tpr6g3049 380 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3049 Tpr-Chr6 33122390 33124905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3049 22 132 TCP Transcription Factor Family AT3G02150 66.387 2.95e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Tpr6g3049 TCP 1.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3049 - - var:108327895 336.265