Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3021 ATGAGGCTTAATATATCAGTTCTATGTGTCATTGTGCTATTTTCTTATGCAGCTGCGTATGATCCTTTGGATCCCAACGGAAACATAACGATCAAATGGGATGTTGTGTCTTGGACAGCAGATGGCTATGTGGCAGCGGTAACAATGAGCAATTTCCAAATGTACCGACACATAATGAATCCAGGATGGACATTAGGATGGTCATGGGCTAAGAAAGAAGTAATATGGTCAATGGTAGGATCTCAAACAACTGAACAAGGAGATTGCTCTAAATTCAAAGGCAATGTACCTCATTGCTGCAAGAAAACTCCTACAGTTGTAGACTTTCTACCTGGTGTACCGTACAATCAACAATTCTCAAACTGTTGTAAAGGTGGAGTTGTAGCAGCATGGGGACAAGATCCTTCATCAGCTGTTTCAGCTTTCCAAATTAGTGTTGGACAAGCTGGTACTTCAAACAAGACAGTGAAACTTCCTAAGAACTTTACTCTTTTGGCTCCTGGTCCTGGTTATACTTGTGGTCCGGCTAAGATTGTTCCTTCCACCACTTTCCTCACCCCAGATAAGCGCCGCAAGACTCAAGCGCTTATGACATGGAATGTTACATGTACATACTCACAATTTCTTGCAAGAAAGAATCCAAGTTGCTGTGTATCTTTGTCATCCTTCTATAATGAGACTATCACCCCTTGTCCTTCTTGTGCCTGTGGCTGCCAGAACAACAAGAAGAATTGTGTCAAGGGTAATTCCAAATTTCTGGACATGGTAGGGTTACATACTCCAAAGAGGGACAATGAACCATTGCTTCAGTGTACTCATCATATGTGCCCTATTAGGGTACACTGGCATGTGAAGACCAACTATAAGGACTATTGGAGAGTTAAGCTAGCAGTGACAAATTTCAATTACAGATTGAACTATTCTCTTTGGACTCTTGCTGTACAGCATCCAAATCTTAACAATGTCACCCAAGTTTTCAGCTTTGATTACAAACCTTTGCTTCCCTACCAATCCATAAATGACACTGGCATGTTTTATGGTATGAAATACTTCAATGATCTCTTAATGGAAGCTGGACCAAGTGGAAATGTACAATCAGAAGTGCTTCTTCAAAAGAACAAGGAAACGTTCACATTCAATCAAGGATGGGCGTTTCCTAGAAGAGTCTACTTCAATGGTGAAGAATGCATGATGCCTTCACCTGATTCCTACCCTTACCTCCCTAATTCTTCTCCTAAGAATGTCCTCAACTTCCAAACATTCATTATCTCATTTCTTCTCTTCTTAGCTCTTTGGTGTATTGGTACATAA 1311 0.4073 MRLNISVLCVIVLFSYAAAYDPLDPNGNITIKWDVVSWTADGYVAAVTMSNFQMYRHIMNPGWTLGWSWAKKEVIWSMVGSQTTEQGDCSKFKGNVPHCCKKTPTVVDFLPGVPYNQQFSNCCKGGVVAAWGQDPSSAVSAFQISVGQAGTSNKTVKLPKNFTLLAPGPGYTCGPAKIVPSTTFLTPDKRRKTQALMTWNVTCTYSQFLARKNPSCCVSLSSFYNETITPCPSCACGCQNNKKNCVKGNSKFLDMVGLHTPKRDNEPLLQCTHHMCPIRVHWHVKTNYKDYWRVKLAVTNFNYRLNYSLWTLAVQHPNLNNVTQVFSFDYKPLLPYQSINDTGMFYGMKYFNDLLMEAGPSGNVQSEVLLQKNKETFTFNQGWAFPRRVYFNGEECMMPSPDSYPYLPNSSPKNVLNFQTFIISFLLFLALWCIGT* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3021 436 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0031225
Tpr6g3021 436 PANTHER COBRA-LIKE PROTEIN 4 430 - -
Tpr6g3021 436 PANTHER PROTEIN COBRA 4 430 IPR006918 GO:0010215|GO:0031225
Tpr6g3021 436 PIRSF COBRA 1 434 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3021 Tpr-Chr6 32867068 32875103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3021 19 431 COBRA Gene Family AT3G29810 67.874 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3021 - - gmx:100783410 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0217 2 2870229 2873498 Tpr6g3021 6 32867068 32875103 PCT
Tpr6g3021 6 32867068 32875103 Tpr2g0218 2 2875505 2879506 PCT