Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3013 ATGGGAAGGGGTAGGGTTCAGCTGAAACGGATCGAGAACAAAACAAGTCAACAAGTGACATTTTTCAAAAGAAGAACTGGACTTCTCAAGAAAGCTAATGAAATTTCTGTTCTTTGTGATGCTCAAGTTGCTTTGATTATGTTCTCTACCAAAGGAAAACTTTTTGAGTATTCATCTGCACCAAGCATGGAAGACATCTTGGAAAGATATGAGAGACAAAACCATACAGAGCTTACTGGAGCTACCAATGAAACACAGGGAAACTGGTCTTTTGAATACATGAAGCTCACTGCTAAAGTTCAAGTCTTGGAGAGGAACTTAAGGAACTTTGTGGGAGATGATCTGGACCCTTTGAGTGTGAAAGAGCTTCAGAGTTTGGAGCAACAGCTTGACACATCACTAAAGCGCATCCGAACAAGAAAGAACCAAGTTATGAATCAATCCATCTCAGAGCTGCATAAAAGGACAAGGGCATTGCAGGAGCAAAACAGCAAGCTAGCAAAGACAAAGGAGAAAGAGAAGACAGTGAGTGAACATCCAAAAAGAGGCCTAGAAACAATAGGCTTAGGGCAATGTTCAGGCACTCTCAACTTGATTTGTCAACCAGAGGTACCACCACCACCACCACCACCACAAAGATTGGTTCCTTCTCTAAATCTCAGGGATGCTTTACAAGCAAGAAGGACATTGGAAATGGAAGAAACAGGTGAAGCTCAAACTGTTCCTAGAACCAATAATAGTCTCATTCCAGCATGGATGCTACAACATCTCACAAATTAG 780 0.4167 MGRGRVQLKRIENKTSQQVTFFKRRTGLLKKANEISVLCDAQVALIMFSTKGKLFEYSSAPSMEDILERYERQNHTELTGATNETQGNWSFEYMKLTAKVQVLERNLRNFVGDDLDPLSVKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRTRALQEQNSKLAKTKEKEKTVSEHPKRGLETIGLGQCSGTLNLICQPEVPPPPPPPQRLVPSLNLRDALQARRTLEMEETGEAQTVPRTNNSLIPAWMLQHLTN* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3013 259 PANTHER MADS BOX PROTEIN 1 227 - -
Tpr6g3013 259 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Tpr6g3013 259 Pfam K-box region 84 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr6g3013 259 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr6g3013 259 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr6g3013 259 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Tpr6g3013 259 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr6g3013 259 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr6g3013 259 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr6g3013 259 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr6g3013 259 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 227 - -
Tpr6g3013 259 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Tpr6g3013 259 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr6g3013 259 Coils Coil 123 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3013 Tpr-Chr6 32728663 32735750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3013 1 176 MADS-box Gene Family AT1G26310 58.564 9.31e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr6g3013 K-box 2.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3013 K09264 - gmx:100788956 327.405