Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3008 ATGGGTTCTATTTGTTCTTGTTTGACTGTTGATGATTTAGAAGATTATGCGAATCCACATAGTCATGTATTTAGGAACTGCGTGTGCGGCGGTTGCTTCCTACAAAACCTTTTGAATGTTTATGCATCAATATTCCGGAGAGGGGAAATGCAGCCGCTTCCTACATCTATACAGGGGGCAGCATCTAGGACTTCTACTGCATCACTTGATAATTCTCTATCAGACATATACCGTTCTCCTCCAAGGCCGTTGCCTTATGATGCAGACCCTAGGCATTTCCGCTCACAGCATGACGGACTAGTTTCAAGACGTGAAAAGGGTTCCAGTCATTTGAATGAGGAGTCAGAACCTCTAAGGGATGATTTAGATGTAGATTCAGAATCTATGAACTTGAGTGGTAAATGGAATGAATCCACTGGCAAAGATGGGTCAAAGGAATACCGCTCAAAGTCCACGGTAAGACTTTCTTCGGCAAAACCTACAACTGGAGCTGAGATTGTGTACGCATCATCAGAAGAGGAGGATGTTTGTCCAACTTGTCTTGAAGAATACACTGAAGAGAATCCGAAGATAGTGACAAAATGTTCTCATCATTATCATCTTGGTTGCATATATGAGTGGATGGAGAGAAGTGACACCTGTCCTGTTTGTGGGAAGGTGATGCTATTCGATGAAACAACTTAA 684 0.4254 MGSICSCLTVDDLEDYANPHSHVFRNCVCGGCFLQNLLNVYASIFRRGEMQPLPTSIQGAASRTSTASLDNSLSDIYRSPPRPLPYDADPRHFRSQHDGLVSRREKGSSHLNEESEPLRDDLDVDSESMNLSGKWNESTGKDGSKEYRSKSTVRLSSAKPTTGAEIVYASSEEEDVCPTCLEEYTEENPKIVTKCSHHYHLGCIYEWMERSDTCPVCGKVMLFDETT* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3008 227 MobiDBLite consensus disorder prediction 56 152 - -
Tpr6g3008 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 226 IPR013083 -
Tpr6g3008 227 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
Tpr6g3008 227 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 226 - -
Tpr6g3008 227 SUPERFAMILY RING/U-box 172 224 - -
Tpr6g3008 227 MobiDBLite consensus disorder prediction 85 127 - -
Tpr6g3008 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Tpr6g3008 227 SMART ring_2 177 217 IPR001841 -
Tpr6g3008 227 MobiDBLite consensus disorder prediction 56 75 - -
Tpr6g3008 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3008 Tpr-Chr6 32698324 32703194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3008 1 226 C3H Transcription Factor Family AT5G15790 58.009 3.76e-93 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3008 - - gmx:100788192 389.423