Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3001 ATGGTGGTTGTTTTGGCTTCATCCTCTGATGCTGGTGGTGGGATTGGATGTTGGGATCTTCATACAGGTTCTGAGCAGATCCGCTACAAATCACTTTCTTCCCCTTGTCATGGACTTACCTCTGTTGGTGATCGTTTCCTTGCATCTTCTCAGCTTCGAGACACGGCGACTTCTGCTGGTTCTGTTTTCTTCTGGTCTTGGTCCAAGCCTCAAGTTGAAGTTAAGAGCTTTCCAGCCGAACCTATTACACCTCTTGCTTCTAATCACAGTGGCACCTATCTAGTTGGTGGTGGATTGTCAGGTGACATATACTTGTGGGAGGTTGAAACCGGAAAATTACTTAAGAAGTGGCATGGTGATAATACAGCTGTTACTTGCTTGGTATTTTCTGAAGATGACTCACTTCTAATATCTGGTTTTAAAAATGGAAGCATACGAGTTTGGTCTCTCTTAATGATATTTGATGATGTGAGAAGACAGGAAGCAAGCAAGATTTACGAGTATAGTTTTTCAGAACACACCTTGTGTGTAAATGATGTTGTGATTGGTTATGGAGGGTACAATGCAATTATAGCTTCAGCATCAGATGATCGGACCTGTAAGGTATGGAGCTTATCTAATGGAATGCTTCAAAGAAACATTATATTTCCTTCAAAAATTAAAGCCATTGCACTTGATCCTGCTGAACATGCCCTTTATGCTGGCGGTGAAGATGGAAAAATATATATTGCTGCACTTAACACCACAAAAATCACTACTAATAACCATGTTTCATATATCACTGGTTCATTTTCTAACCATAGCAAGGCAGTTACTTGCTTAGCATATAGCGCCGGCGAAAATTATTTAATATCTGGATCTGATGATGGAATAGTTCGAGTTTGGAATGCCAGTACTCATAATATCATCCGTGTGTTTAAACATGCTAAAGGACCAATTACAAATATTCTTGTTCTTAGCCCAGAAAATGATTCAAGTAATCATGTGTCTTCTAATTTACAAGTAGCCTCAAAAAAGAAGGGAGCTCAATTTCCTCCTTTGGAAAAATATACAAATTCAATAGATGAAGACTCGGATATAAAGACTATTGTCAGTCTTGGGGGTAGCAAGAGATGCATGGATGAGGTTTCATACCTTAGTTCTCATGTGATTTCTAGTTACAGTAAGGAACTTCAGAATCAAGGTTCGGCTGCTGCTTCTGAAATGGAGATAGAGAAACTAAAACGTGATTGCCAAAAGTCAATGCAGATGGTTAACCAATGGAAGAAAATGTATGATAACCTGCATCAATTTTGTGTAAAGGAGCTGCTAGACGAAAATGCGAAATAA 1329 0.3905 MVVVLASSSDAGGGIGCWDLHTGSEQIRYKSLSSPCHGLTSVGDRFLASSQLRDTATSAGSVFFWSWSKPQVEVKSFPAEPITPLASNHSGTYLVGGGLSGDIYLWEVETGKLLKKWHGDNTAVTCLVFSEDDSLLISGFKNGSIRVWSLLMIFDDVRRQEASKIYEYSFSEHTLCVNDVVIGYGGYNAIIASASDDRTCKVWSLSNGMLQRNIIFPSKIKAIALDPAEHALYAGGEDGKIYIAALNTTKITTNNHVSYITGSFSNHSKAVTCLAYSAGENYLISGSDDGIVRVWNASTHNIIRVFKHAKGPITNILVLSPENDSSNHVSSNLQVASKKKGAQFPPLEKYTNSIDEDSDIKTIVSLGGSKRCMDEVSYLSSHVISSYSKELQNQGSAAASEMEIEKLKRDCQKSMQMVNQWKKMYDNLHQFCVKELLDENAK* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3001 442 Pfam WD domain, G-beta repeat 262 296 IPR001680 GO:0005515
Tpr6g3001 442 Pfam WD domain, G-beta repeat 113 149 IPR001680 GO:0005515
Tpr6g3001 442 Pfam WD domain, G-beta repeat 169 204 IPR001680 GO:0005515
Tpr6g3001 442 PANTHER WD-REPEAT PROTEIN 18 2 436 IPR045227 -
Tpr6g3001 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 117 150 IPR001680 GO:0005515
Tpr6g3001 442 Gene3D - 2 212 IPR015943 GO:0005515
Tpr6g3001 442 SUPERFAMILY WD40 repeat-like 11 318 IPR036322 GO:0005515
Tpr6g3001 442 Gene3D - 213 332 IPR015943 GO:0005515
Tpr6g3001 442 PANTHER WD REPEAT-CONTAINING PROTEIN 18 2 436 - -
Tpr6g3001 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 299 - -
Tpr6g3001 442 PRINTS G protein beta WD-40 repeat signature 136 150 IPR020472 -
Tpr6g3001 442 PRINTS G protein beta WD-40 repeat signature 191 205 IPR020472 -
Tpr6g3001 442 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Tpr6g3001 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Tpr6g3001 442 ProSitePatterns Trp-Asp (WD) repeats signature. 283 297 IPR019775 -
Tpr6g3001 442 Coils Coil 404 424 - -
Tpr6g3001 442 SMART WD40_4 163 204 IPR001680 GO:0005515
Tpr6g3001 442 SMART WD40_4 257 296 IPR001680 GO:0005515
Tpr6g3001 442 SMART WD40_4 207 245 IPR001680 GO:0005515
Tpr6g3001 442 SMART WD40_4 70 107 IPR001680 GO:0005515
Tpr6g3001 442 SMART WD40_4 110 149 IPR001680 GO:0005515
Tpr6g3001 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 117 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3001 Tpr-Chr6 32592328 32597621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3001 80 326 Eukaryotic Initiation Factors Gene Family AT2G46290 22.137 2.25e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3001 K14829 - gmx:100791195 635.95