Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2996 ATGGCTAGGTCTGCTAAAGGCAATCAAGATGAAGAATTGGTTGATGATGACGATCAAGACCTCTTCACTGCAAACAATTCTTCTTCTCTCAACAACAATGTGAAGGTGGATGAACCTAACAGAGGGAAAAGGGCTAACCCTCATCGTTCTAAGCATTCAGAAACTGAGCAGCGTAGAAGAAGCAAAATTAATGAAAGATTTCAGGTTCTTAGAGATCTGATACCTGAAAATGATCAAAAAAGAGATAAAGCTTCTTTTTTGTTGGAGGTTATTGAATATATTCAGTTCCTAAAGGAAAAGTTACAAGTTTATGAACAATCTTATGAAGGATGGAGTCAGGAGCCAACTAAATTAATTCCATGGAGAAATCTTCATGGACCTGCTGAAAACACTACGGATGCTTCTCGAGCTATTCAAAATGGGTCTATTCAAAATGGTATGGTGACTCAACAGATGATGGAGTTGCCTGTATCTAATGCTGACATGGATACCAATCTCCAGCATCAAGTATGGCTTAGCAAACCAAACAAGGACTATATTGTTCCAAATAATACATTGAAGGATCAAGAGGAGATGAAAATTGAAAGTGGATCGGAGTCAGATAGCGTCTCAAGTGCCTATTCTCAAAGAATATTGGGTACTCTCACCCAAGCGCTGCAATCTTCAGGTGTAGATTTGACCCAGGCCAGTGTCTCAGTGGATATTGATGTTGGTCGGCGAGCAAATACTGGGTTGACCCCCTGCCAATATAGCTCAAAGGGTCATCATGAAAATCCATTTGTGAACAATCAAGCAATGGCATGTTCAGGAATGGATTACTTCAGTGAGGATTCTGAACAGAGTCCAAAGAGGTTCAGACAAGAATCAAGCTAG 873 0.4021 MARSAKGNQDEELVDDDDQDLFTANNSSSLNNNVKVDEPNRGKRANPHRSKHSETEQRRRSKINERFQVLRDLIPENDQKRDKASFLLEVIEYIQFLKEKLQVYEQSYEGWSQEPTKLIPWRNLHGPAENTTDASRAIQNGSIQNGMVTQQMMELPVSNADMDTNLQHQVWLSKPNKDYIVPNNTLKDQEEMKIESGSESDSVSSAYSQRILGTLTQALQSSGVDLTQASVSVDIDVGRRANTGLTPCQYSSKGHHENPFVNNQAMACSGMDYFSEDSEQSPKRFRQESS* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2996 290 Pfam Helix-loop-helix DNA-binding domain 49 97 IPR011598 GO:0046983
Tpr6g2996 290 SMART finulus 53 103 IPR011598 GO:0046983
Tpr6g2996 290 MobiDBLite consensus disorder prediction 20 36 - -
Tpr6g2996 290 MobiDBLite consensus disorder prediction 1 62 - -
Tpr6g2996 290 CDD bHLH_AtBIM_like 49 122 - -
Tpr6g2996 290 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 143 IPR044295 GO:0003700|GO:0006351|GO:0046983
Tpr6g2996 290 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 145 289 IPR044295 GO:0003700|GO:0006351|GO:0046983
Tpr6g2996 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 97 IPR011598 GO:0046983
Tpr6g2996 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 124 IPR036638 GO:0046983
Tpr6g2996 290 MobiDBLite consensus disorder prediction 37 62 - -
Tpr6g2996 290 Coils Coil 94 114 - -
Tpr6g2996 290 PANTHER TRANSCRIPTION FACTOR BIM3 1 143 - -
Tpr6g2996 290 PANTHER TRANSCRIPTION FACTOR BIM3 145 289 - -
Tpr6g2996 290 Gene3D - 45 118 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2996 Tpr-Chr6 32509643 32517321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2996 3 253 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 43.007 9.46e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr6g2996 HLH 6.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2996 - - mtr:MTR_7g017320 429.098