Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2974 ATGTTGGAGCACGAATTCCTCACCACCACCTCGGCCACCGGAAGTGTTAGGTCTGCGGTCACGTGGCCACGTGCATGTGACACATGCCGCTCTGCTCCATGCGCCGTATTCTGCCGCGCAGACTCAGCATATTTATGCGCTGGGTGCGATTCGCGCATCCATGCAGCAAACCGAGTAGCCTCGAGGCACGAGCGTGTTTGGGTCTGTGAGGCCTGTGAGCGTGCCCCGGCGGCTTTTCTTTGTAAAGCTGATGCTGCTTCTCTTTGCTCCTCTTGTGATGCTGATATCCACTCTGCTAACCCTCTTGCCAGCCGCCATCAACGTGTCCCAATTCTCCCAATTTCCGGTTACCTTTACGGTCCTCCGACGACCCTTTTAGGTGCCGACGATGAAGGCTTTGTCGGCGGTGGTTGTGCCGGTGGTGAGGTGGAGGAAGAGGAGGATGAAGGTATGGAAGATGAAGCAGCTTCATGGCTTTTGTTGAATCCACTAAAGAATAGCAATAACAATAGTAACAACCACAACAACAACATCAACAACAATAGCAATGATCATAATAATCAAGAGGGTAATAATGGTTTTTTGTTTAGTGGTGAGGTTGATGAGTATTTGGATCTTGTGGATTGTAATTCTTGTGGTGGTGGTGATAACACTTTCACTACCAATACTACTACTACTACTACTACTACTCATCATGATGAGTATAGTCATCAACAGCAAGATCATTATGGTGTTCCTCAAAAGAGCTATGTTGGGGATAGTGTTGTTCCTGTTCAACAACAGCAAGTACAGAATTTTCAACTTGGGTTGGAGTTTGAATCTTCCAAAGCTGGATTCAGTTACAATGGTGGTTCTATTAGTCAAAGTGTTTCAGTTTCATCAATGGATGTTGGTGTTGTACCAGAATCAACAATGAGAGATGTCTCAATGAACTATTCAAGAACTTCAAAAGGAACAATTGACCTATTTTCAGGTCCTCCAATTCAAATGTCTTCTCATTTCTCACCAATGGACAGAGAAGCCAGAGTTCTAAGGTATAGAGAGAAAAAGAAAACAAGAAAATTTGAGAAGACAATTAGGTATGCCTCAAGGAAAGCCTATGCAGAGACTCGACCGCGTATAAAAGGTCGATTCGCAAAGCGAACAGATGCAGATGCTGAAGTTGATCAAATGTTTTCCACATCATTAATTACGGAAGTTGGATATGGCATTGTTCCCTCATTCTAA 1227 0.445 MLEHEFLTTTSATGSVRSAVTWPRACDTCRSAPCAVFCRADSAYLCAGCDSRIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHQRVPILPISGYLYGPPTTLLGADDEGFVGGGCAGGEVEEEEDEGMEDEAASWLLLNPLKNSNNNSNNHNNNINNNSNDHNNQEGNNGFLFSGEVDEYLDLVDCNSCGGGDNTFTTNTTTTTTTTHHDEYSHQQQDHYGVPQKSYVGDSVVPVQQQQVQNFQLGLEFESSKAGFSYNGGSISQSVSVSSMDVGVVPESTMRDVSMNYSRTSKGTIDLFSGPPIQMSSHFSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDADAEVDQMFSTSLITEVGYGIVPSF* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2974 408 Pfam B-box zinc finger 66 111 IPR000315 GO:0008270
Tpr6g2974 408 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 21 408 - -
Tpr6g2974 408 Pfam CCT motif 339 381 IPR010402 GO:0005515
Tpr6g2974 408 CDD Bbox1_BBX-like 25 68 - -
Tpr6g2974 408 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 408 IPR045281 GO:0009909
Tpr6g2974 408 ProSiteProfiles Zinc finger B-box type profile. 26 68 IPR000315 GO:0008270
Tpr6g2974 408 SMART bboxneu5 21 68 IPR000315 GO:0008270
Tpr6g2974 408 SMART bboxneu5 69 111 IPR000315 GO:0008270
Tpr6g2974 408 CDD Bbox1_BBX-like 68 111 - -
Tpr6g2974 408 ProSiteProfiles CCT domain profile. 339 381 IPR010402 GO:0005515
Tpr6g2974 408 ProSiteProfiles Zinc finger B-box type profile. 64 111 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2974 Tpr-Chr6 32263715 32266908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2974 21 408 C2C2-CO-like Transcription Factor Family AT3G02380 54.364 2.30e-133 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Tpr6g2974 zf-B_box 1.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2974 - - ahf:112744683 431.409