Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2973 ATGATTAAACCAAGAGAAAAAACTCTTCTTTGTTTTGCATTTTTCTTCTTTTGGAGTAGTTTTTCATGTTCAAATGCTTTGCTTTCTTCTAAAGGAGTAAACTTTGAAGTGCAAGCTTTAATGGGTATAAAAGACTCTTTGGTAGATCCTCATGGTGTTCTTGATAATTGGGATGGTGATGCAGTTGATCCATGTAGTTGGACTATGGTTACTTGTTCTAATGAAAACCTTGTCATTGGATTGGGCACTCCTAGTCAAAGTTTATCAGGTACTTTATCTCCAAGCATAGGGAATTTAACCAATCTTCAGATTGTGTTGCTACAGAATAACAACATAACTGGATCAATCCCTTCAGAATTAGGAAAACTCCCTAAGCTTCAAACTCTTGATCTCTCTAATAATTTCTTCAGTGGTGATATTCCTCCTTCTCTTGGTCACTTAAGAAGCCTTCAATACTTGAGGCTCAATAATAATAGTCTTGTTGGTGAATGTCCAGAATCACTTGCTAACATGACACAACTTGCTTTTCTTGATTTGTCCTACAACAATCTTAGTGGACCAGTCCCAAGAATTTTGGCCAAATCATTCAGCATTGTTGGTAATCCTCTTGTTTGTGCTACTGGAAATGAACCAAATTGTCATGGGATGACACTGATGCCAATTTCCATGAACTTAAACAATACTCAAGATGCTTTACCATCAGGCAAACCAAAAAGTCATAAAATGGCTATAGTCTTTGGTTTGAGTCTTGGATGTCTCTGCTTGATAGTTGTTGGTTTTGGATTTGTTCTTTGGTGGAGACACAAGCATAATCAACAAGCATTCTTTGATGTCAAAGATCGGCATCACGAAGAAGTTTACCTTGGAAACTTGAAGAGGTTTCCATTCAGAGAACTTCAGATTGCTACAAATAACTTCAGCAGCAAAAACTTAGTTGGAAAAGGTGGTTTTGGAAATGTCTACAAAGGAATTCTTTCAGATGGAACTGTTGTAGCTGTAAAGAGGCTTAAAGATGGAAATGCAGTTGGAGGAGAGATTCAATTTCAGACTGAAGTTGAAATGATTAGCTTAGCAGTGCATAGAAATCTCCTTAGACTTTATGGATTTTGCATGACATCTAATGAAAGGCTTTTAGTTTATCCTTACATGTGCAACGGAAGTGTTGCGTCTCGTTTGAAGGGTAAACCAGTCTTGGATTGGGGAACAAGGAAGAACATTGCATTAGGAGCAGCAAGGGGACTACTCTACCTTCATGAACAATGTGATCCAAAGATAATTCATAGAGATGTGAAAGCTGCAAATATATTGCTTGATAACTATTGTGAAGCTGTTGTTGGAGATTTTGGTTTGGCAAAGCTTTTGGATCATCAAGATTCACATGTCACAACTGCAGTGAGAGGAACTGTAGGACATATTGCACCAGAATATCTTTCCACAGGACAATCCTCTGAGAAAACTGATGTGTTTGGATTTGGTATTCTTCTTCTTGAATTAATCACTGGTCAAAGAGCCTTGGAATTTGGAAAAGCTGCTAACCAAAAAGGAGCCATGCTTGATTGGGTGAAGAAAATTCATCAAGAAAAGAAACTTGAATTACTAGTAGACAAAGATCTAAAAAGCAACTATGACAAAATTGAGCTTGAAGAAATGGTTCAAGTAGCACTCTTATGTACTCAATACCTTCCAAGTCATAGACCTAAAATGTCTGAAGTTGTAAGAATGCTTGAAGGTGATGGATTAGCTGAGAGATGGGAAGCATCTCAAAGAACTGACACTTCAAAATTCAAACACCATGAACCATCTTTATCAGATAGATATTCTGATCTTACTGATGATTCTGTGTTATTAGTACAAGCTATGGAGCTTTCAGGACCAAGGTGA 1881 0.3727 MIKPREKTLLCFAFFFFWSSFSCSNALLSSKGVNFEVQALMGIKDSLVDPHGVLDNWDGDAVDPCSWTMVTCSNENLVIGLGTPSQSLSGTLSPSIGNLTNLQIVLLQNNNITGSIPSELGKLPKLQTLDLSNNFFSGDIPPSLGHLRSLQYLRLNNNSLVGECPESLANMTQLAFLDLSYNNLSGPVPRILAKSFSIVGNPLVCATGNEPNCHGMTLMPISMNLNNTQDALPSGKPKSHKMAIVFGLSLGCLCLIVVGFGFVLWWRHKHNQQAFFDVKDRHHEEVYLGNLKRFPFRELQIATNNFSSKNLVGKGGFGNVYKGILSDGTVVAVKRLKDGNAVGGEIQFQTEVEMISLAVHRNLLRLYGFCMTSNERLLVYPYMCNGSVASRLKGKPVLDWGTRKNIALGAARGLLYLHEQCDPKIIHRDVKAANILLDNYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLELLVDKDLKSNYDKIELEEMVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAERWEASQRTDTSKFKHHEPSLSDRYSDLTDDSVLLVQAMELSGPR* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2973 626 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Tpr6g2973 626 ProSiteProfiles Protein kinase domain profile. 306 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2973 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 5 626 - -
Tpr6g2973 626 Pfam Leucine Rich repeats (2 copies) 100 141 IPR025875 -
Tpr6g2973 626 SUPERFAMILY L domain-like 35 198 - -
Tpr6g2973 626 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Tpr6g2973 626 Gene3D Ribonuclease Inhibitor 33 215 IPR032675 -
Tpr6g2973 626 SMART serkin_6 306 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2973 626 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Tpr6g2973 626 SUPERFAMILY Protein kinase-like (PK-like) 283 576 IPR011009 -
Tpr6g2973 626 SMART LRR_typ_2 123 146 IPR003591 -
Tpr6g2973 626 SMART LRR_typ_2 147 170 IPR003591 -
Tpr6g2973 626 SMART LRR_typ_2 99 122 IPR003591 -
Tpr6g2973 626 SMART LRR_typ_2 171 194 IPR003591 -
Tpr6g2973 626 Pfam Protein kinase domain 307 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2973 626 Gene3D Phosphorylase Kinase; domain 1 275 382 - -
Tpr6g2973 626 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 5 626 - -
Tpr6g2973 626 Gene3D Transferase(Phosphotransferase) domain 1 383 595 - -
Tpr6g2973 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2973 Tpr-Chr6 32246559 32251279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2973 7 626 Receptor kinase-like Gene Family AT5G16000 78.219 0.0 996
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Tpr6g2973 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2973 - - gmx:100798412 1114.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0193 2 2515710 2520995 Tpr6g2973 6 32246559 32251279 PCT