Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2955 ATGGATGCGCGTCGAGCTCCACGCGCCGTCATTGACCCTATAGTTCGCAAGGTCGGGTTCTTCACTCCACCCGACCCTATTCCGTTCGAATTTTCCCCCTCCGCCAATTCTCTCTCTCCTGTCATGATCCCTCCGCCGCGTCATTCATCGGAAAATCACGACATTAATTCTCGTCCTTCCGTTACTTCTCCTTCCGGCGATGAAACAATTGCGGTCTCCGGTAGCTGTAATAGTATCTTATCGGAGTTGTTTCCTGCTCCGATGTTGCCGGCACAGTCTCCGAAGATTGGAAATGGAGATGGAGGTGGAATTGTGGCTTCTTCGTTTCCGAGAGGTGGATTTGACTTGACGGTGGTGAAAGCTAGTGGTGGAGTTCCGGTGTGTAAATTGACTACGGTTTCTGTAGTCAATGCTGATTCGTTTGCTATTGATGAAAGAGAGAAACCAAACAAAGGAGGAGGATCCACAATGGAGGGGAAAGACCAAGCTATGAATTCAAAACAGAAGAAAGATAAGTCTTCAAAAGCTGAAAGACGCGCCCTTCAAGAAGCTCAGCGAGCTGCAAAGGCTGCTGCAAAAGCTGAAGGAAATAAGGCATCTGGAACTGCGACTTCAGTGAATGTAAAATCAGCTAAAGCTGTGAAGGCCCCACAAAAAGTTGATAATACTTCAGTTGGAGCTTCTGAGAAGAAGGGAGGTGATCGTCCATCTGAAAAGGATAGGAAAAAAGATGTTCCTCACCCACGCATGCAATATGATGATAAGAGCAGAGTGGAGAAAGCTAAACGTCGTGCTGTGGTAAACCAAACTGAAGCCAGGAACAGAGTTGAACTATTCAGACATTTGCCACAATACGAACATGGGAGTCAGCTTCCTGATCTTGAGGCAAAGTTTTTCCAGCTTGATCCTGTACATCCTTCAGTTTATAAGGTGGGTTTGCAGTATCTGTCTGGAGATATATCTGGTGGAAATGCTCGTTGTATTGCTATGCTTCAAGCATTCCAGGATGCCATCAGAGACTACACAGTTCCATCTGAGAAGACTCTAGTGAGAGACTTGACAGCAAAAATAAGTAGCTATGTTTCATTCCTTATTGAGTGCCGACCTCTTTCAATCAGTATGGGAAATGCAATTAGATTTCTCAAAAGTCAAATTGCAAAGCTACCTCTGACACTGTCTGAGTCAGAATCAAAATCTTCTCTTCAATCAGATATTGAGAATTTTATATATGAGAAGATTATACTTGCTGACAAGGCGATAGTAGAGCATGCTGTCACAAAAATAAGAGATGGCGATGTTCTTCTTACTTATGGGTCATCATCAGCAGTTGAAATGATACTGTTACATGCATATGAGTTAGGGAAACAGTTCCGAGTTGTAGTAGTAGACTCTCGTCCAAGGCTTAGAGGGAAACTTTTGCTTCGTAGACTAGTGGAGAAAGGTCTCAGTTGTACATACACTCATATCAATGCTGTTTCCTACATAATGCAAGAAGTTACCCGAGTTTTTTTGGGTGCTTCTTCGGTGTTGTCTAATGGAACAGTTTATTCGGGAGTTGGGACTGCATGTGTTGCAATGGTTGCTCATTCTTTCCATGTCCCTGTTATAGTTTGTTGTGAAGCTTTTAAATTTCATGAAAGGGTTCAGCTTGATTCAATATGCTCAAATGAACTTGGTGATCCAGATGCCATTTCAAAGGTTTCGGGTAGAGAGGATGTTAACGACTTAGATGCTTGGGCCAATACTGAAAATCTGCAACTTCTGAATCTGATCTATGATGCAACGCCTTCAGATTATGTTTCAATGATTGTTACAGATTATGGCATGATCCCCCCAACAAGTGTTCCTGTAGTTGTAAGGAAATATAGCAGAGAACAGGTGTGGATATAA 1890 0.4307 MDARRAPRAVIDPIVRKVGFFTPPDPIPFEFSPSANSLSPVMIPPPRHSSENHDINSRPSVTSPSGDETIAVSGSCNSILSELFPAPMLPAQSPKIGNGDGGGIVASSFPRGGFDLTVVKASGGVPVCKLTTVSVVNADSFAIDEREKPNKGGGSTMEGKDQAMNSKQKKDKSSKAERRALQEAQRAAKAAAKAEGNKASGTATSVNVKSAKAVKAPQKVDNTSVGASEKKGGDRPSEKDRKKDVPHPRMQYDDKSRVEKAKRRAVVNQTEARNRVELFRHLPQYEHGSQLPDLEAKFFQLDPVHPSVYKVGLQYLSGDISGGNARCIAMLQAFQDAIRDYTVPSEKTLVRDLTAKISSYVSFLIECRPLSISMGNAIRFLKSQIAKLPLTLSESESKSSLQSDIENFIYEKIILADKAIVEHAVTKIRDGDVLLTYGSSSAVEMILLHAYELGKQFRVVVVDSRPRLRGKLLLRRLVEKGLSCTYTHINAVSYIMQEVTRVFLGASSVLSNGTVYSGVGTACVAMVAHSFHVPVIVCCEAFKFHERVQLDSICSNELGDPDAISKVSGREDVNDLDAWANTENLQLLNLIYDATPSDYVSMIVTDYGMIPPTSVPVVVRKYSREQVWI* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2955 629 Pfam Initiation factor 2 subunit family 320 612 IPR000649 GO:0044237
Tpr6g2955 629 PANTHER TRANSLATION INITIATION FACTOR EIF-2B DELTA SUBUNIT 3 629 - -
Tpr6g2955 629 MobiDBLite consensus disorder prediction 47 66 - -
Tpr6g2955 629 MobiDBLite consensus disorder prediction 144 265 - -
Tpr6g2955 629 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 3 629 - -
Tpr6g2955 629 MobiDBLite consensus disorder prediction 231 265 - -
Tpr6g2955 629 SUPERFAMILY NagB/RpiA/CoA transferase-like 277 622 IPR037171 -
Tpr6g2955 629 Gene3D - 415 622 IPR042529 -
Tpr6g2955 629 MobiDBLite consensus disorder prediction 163 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2955 Tpr-Chr6 31935342 31942490 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2955 1 629 Eukaryotic Initiation Factors Gene Family AT5G38640 62.918 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2955 K03680 - gmx:100785938 957.977