Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2951 ATGGGAAAGAAAAAGACAAATGATGCAGGTCCATCTACAAAAGCTAAGGCTGGTAGCAAAGATCCTACTAAGAAGGAAAAACTTTCAGTCTCTGCCATGTTGGCAAATATGGATGACAAAGCTGAAAAGCCTAAAAAAGGATCTTCTACAAATAAGCCGAAGCCAAAAGCTGCTCCGAAAGCTTCTGCGTACACTGATGATATAGATCTTCCTCCCTCTGATGATGATGAGTCAGAAGAGGAGCTAGAGGAAAAGCATAGACCTGATGTGAAGCCACTTGAGGTGTCTATTGCTGAAAAAGAGTTGAAAAAACGTGAAAAAAAAGATATTATAGCTGCCCATGTGGCTGAACAGGCAAAGAAAGAAGCTCTTAAGGATGATCGTGATGCTTTCACTGTTGTCATTGGAAGTCGGGCTTCGGTGCTTGATGGAGATGATGGTGCTGATGCTAATGTTAAGGATATAACGATTGAAAATTTTTCCGTGTCTGCTCGAGGTAAAGAACTTCTGAAGAATGCCTCAGTGAAGATATCTCATGGCAAGCGGTATGGTTTGGTTGGGCCGAATGGAATGGGAAAGTCAACACTTTTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGTGATGATAAAACAGCGCTTGAAGCCGTTGTTTCGGCTAATATTGAACTTGTTAAAGTTCGACAAGAAGTTGCTGATCTACAGAATGTAGCTTCTGGTGAAGGTGTGGATAAAGATGATACTAATGAGGAAGATGATGCAGGAGAAAAGCTAGCAGAGCTGTATGAACAATTACAGCTGATGGGGTCTGATGCTGCTGAATCTCAAGCGTCAAAAATTTTAGCTGGTCTGGGTTTTACAAAGGATATGCAGGTCCGTCCTACCAAATCCTTTAGTGGGGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAGCCCACTCTATTATTGCTCGATGAACCCACTAATCATCTTGACCTGAGGGCTGTTCTCTGGTTAGAAGAGTACTTGTGTCGTTGGAAGAAAACTTTGGTCGTTGTATCACACGATAAAGATTTTCTCAATACAGTATGCTCTGCGATTATTCACCTGCATGATTGGAAACTTCATTTGTATAATGGAAATTTTGATGCTTTTGAGACCGCGTATGAACAGCGTCGTAGAGAGGTGAATAAGAAGTATGATACTTATGACAAGCAAATGAAAGCGGCTAGAAGGACTGGAAGCAAGGCTCAACAAGATAAGGTGAAGGATCGAGCCAAGTTTGCAGCAGCTAAGGAAGCATCAAAAAGCAAAAGTAAGGGTAAGGTTGATGAGGATGAGGCCCAAGTAGAGGTACCACACAAGTGGAGGGACTACAATGTAGAGTTCCACTTTCCTGAACCTACTGAGCTCACACCACCACTTCTGCAGCTTATTGAAGTGAGCTTCAGCTACCCAAACCGAGAGGATTTCAGACTCTCAGATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCTACACTGCTAAATCTTCTAGCTGGTGATTTGGTTCCAAGTGTAGGTGAAGCTCGAAAGAGTCAGAAGTTGAGGATAGGGAGATACTCCCAACACTTTGTGGACCTACTAACAATGGACGAAACACCTGTTCAGTACCTTCTTCGTCTCCATCCAGACCAGGAAGGATTTAGTAAGCAGGAGGCTGTCCGTGCACAACTTGGTAAATTTGGGTTACCTAGTCATAACCATCTTACCCCCATTGTCAAACTATCAGGAGGGCAGAAAGCTCGTGTGGTCTTCACGTCGATATCCATGTCAAAACCTCACATTTTATTGTTAGATGAACCCACAAATCATCTGGATATGCAAAGTATTGATGCATTGGCTGATGCGCTTGATGAATTCACCGGTGGAGTTGTTCTTGTTAGTCACGATTCTAGATTGATATCTAGTGTCTGTGATGATGAAGAAAGGAGTCAAATATGGATTGTTGAGGACGGCACTGTCAGAAAATTCCCTGGAACATTTGAAGATTACAAGGAAGATTTGGTGAAAGAGATTAAAGCTGAAGTTGATGATTGA 2145 0.427 MGKKKTNDAGPSTKAKAGSKDPTKKEKLSVSAMLANMDDKAEKPKKGSSTNKPKPKAAPKASAYTDDIDLPPSDDDESEEELEEKHRPDVKPLEVSIAEKELKKREKKDIIAAHVAEQAKKEALKDDRDAFTVVIGSRASVLDGDDGADANVKDITIENFSVSARGKELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANIELVKVRQEVADLQNVASGEGVDKDDTNEEDDAGEKLAELYEQLQLMGSDAAESQASKILAGLGFTKDMQVRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDKDFLNTVCSAIIHLHDWKLHLYNGNFDAFETAYEQRRREVNKKYDTYDKQMKAARRTGSKAQQDKVKDRAKFAAAKEASKSKSKGKVDEDEAQVEVPHKWRDYNVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSVGEARKSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGFSKQEAVRAQLGKFGLPSHNHLTPIVKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISSVCDDEERSQIWIVEDGTVRKFPGTFEDYKEDLVKEIKAEVDD* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2951 714 ProSitePatterns ABC transporters family signature. 312 326 IPR017871 GO:0005524
Tpr6g2951 714 PANTHER - 5 714 - -
Tpr6g2951 714 Gene3D - 152 436 IPR027417 -
Tpr6g2951 714 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 487 712 IPR003439 GO:0005524
Tpr6g2951 714 Coils Coil 231 251 - -
Tpr6g2951 714 Pfam ABC transporter 504 639 IPR003439 GO:0005524
Tpr6g2951 714 Pfam ABC transporter 170 340 IPR003439 GO:0005524
Tpr6g2951 714 MobiDBLite consensus disorder prediction 1 92 - -
Tpr6g2951 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 390 IPR027417 -
Tpr6g2951 714 SMART AAA_5 513 689 IPR003593 -
Tpr6g2951 714 SMART AAA_5 179 394 IPR003593 -
Tpr6g2951 714 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 5 714 - -
Tpr6g2951 714 Coils Coil 404 424 - -
Tpr6g2951 714 Gene3D - 449 713 IPR027417 -
Tpr6g2951 714 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 155 408 IPR003439 GO:0005524
Tpr6g2951 714 CDD ABCF_EF-3 155 383 - -
Tpr6g2951 714 CDD ABCF_EF-3 487 689 - -
Tpr6g2951 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 699 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2951 Tpr-Chr6 31863514 31867571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2951 486 665 Calmodulin-binding Proteins AT2G36910 30.952 2.16e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2951 K06184 - gmx:100806865 1144.41