Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2940 ATGGTTTCAGCTCTCTCTCAAGTCATTGGAACATCTACCAATAATCATAATCCTAACGTGGCACAATCAACATCAACTGCCATGGTTAATGAAGAATCTCAACCCTCTCAAGTACCTCTTCTAGATCAAGAGACCCCAAAGAAACCACACTACAGAGGAGTAAGACAGAGACCATGGGGAAAATGGGCAGCTGAAATACGTGACCCAAAAAAAGCAGCTAGAGTTTGGTTAGGAACATTTGAAACAGCTGAAGATGCAGCTATTGCATATGACAAAGCAGCCCTTAAATTCAAAGGCACAAAAGCTAAACTTAATTTCCCTCAAAGACTTGTTCATGACAACTCTAGTGCCATTCAACAAAGTGGTTCTGTTTCTAATAATGTTTCTGTTGATCAACAAGTTTTTCCAAACCTTTTTCAATATGCTCAGATTCTTTCTAGTGATGCCGAATTTCCTTATTATGCTTCTCATCTTTTCAATCAACAACAAGGAGATCATCGTCCGCCAGGCCAGTAG 516 0.3973 MVSALSQVIGTSTNNHNPNVAQSTSTAMVNEESQPSQVPLLDQETPKKPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAIAYDKAALKFKGTKAKLNFPQRLVHDNSSAIQQSGSVSNNVSVDQQVFPNLFQYAQILSSDAEFPYYASHLFNQQQGDHRPPGQ* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2940 171 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Tpr6g2940 171 MobiDBLite consensus disorder prediction 1 41 - -
Tpr6g2940 171 MobiDBLite consensus disorder prediction 1 53 - -
Tpr6g2940 171 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Tpr6g2940 171 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677
Tpr6g2940 171 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Tpr6g2940 171 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Tpr6g2940 171 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 11 138 - -
Tpr6g2940 171 CDD AP2 49 107 IPR001471 GO:0003700|GO:0006355
Tpr6g2940 171 Pfam AP2 domain 49 99 IPR001471 GO:0003700|GO:0006355
Tpr6g2940 171 Gene3D AP2/ERF domain 50 109 IPR036955 GO:0003700|GO:0006355
Tpr6g2940 171 PANTHER DNA-BINDING DOMAIN 11 138 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2940 Tpr-Chr6 31791464 31794456 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2940 1 159 AP2-EREBP Transcription Factor Family AT5G13330 49.438 6.94e-46 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr6g2940 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2940 - - mtr:MTR_7g020980 261.151