Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2932 ATGGCATTGCCTCCAAATTCCGACGAAAACGGCGGAGGAGTTGCCACCGAAGAAGACACCACCATTGATATTCACACAACCCATGGAACCCCCATTCGCTACCTCCCTCTCGATCATCTATACTCCTCTACATCACCGTGTAGTGGTTCTTCCAATGTCATGTCAAAAAAAGTTAAAGCTCGCAAACTCAATAGCGAGATTCAGTTCAACAACGGCGAAATCGATTCATCGGTTAACGATGAGGATGATGATGAGAAAGAGATTTCGAAAACGACGACGTCTTCTATGGTGGTTTATGATAAACCACCGCTTCTGTATGTCTACTCTCGGAGACGAAAGAGGAGCTCGTTTCCGGCGTCAGAGAGGACGGTGTTGAAAAGAAGGAGAATTGGGAGTAATGAACTGGAAAGTTTGGGGATTGACTGGAATTCTTTGGAGAAATTTGAAGGACCTAGATTGAGAGAATGTCGCAATCAATTTGGGAATTCTGCTGGGTTTAATGGGAATAATAGTAATAAGAAGAAGTTTGGTTCTGGTGTTAAGCTTCCTAAGTCCACGCCTGATTCTCACACTTTGAAGAGATGGGTCACGTTGAGCTTTGATGATGCCGATCCCGAGGCTTTTGTCGGACTGAGATGCAAGGTTTACTGGCCAATGGATTCAAAATCGTACACTGGCATAGTCAAACGTTACGATAGGGAAGCTAAGATACATCATATCGAGTATGATGATGGAGACGAGGAAAAATTAGTTCTTTCAAACGAAAATGTTAAATACCATGTTTCCCGTAACGATATGCAACGTTTAAAATTGAGTTACGCCAAAGTTCGTGACAATAATGTCTCTGATTATGATGTTGAAGAGATGCTTGCACTGGCTGCAAGTATGAACGACTGTCAAGACTTTGAGCCTGGGGATATCGTATGGGCCAAGCTTACAGGTTATGCAATGTGGCCAGCTGTTGTTTTGGATGAATCACTTGCTAGCAATTGTAAGGGTTTAAAAACGTTCATAGGGGGGAGATCAGTTCCTGTCCAATTTTTTGGCACTCACGACTTTGCAAGAGTTCGAGTGCAACAGGTGAAATCATTTCTCAGTGGACTCCTAACCGATCTACACTCAAAGTGCAAGAAGCAGAGTTTCATTGAAGGTATAGAAGAGGCAAAAAGGTATTTAAATGCACTGGAGCTTCCCCTGGGGATGATAGAATTGCGGAAAAGATGTACAACTGATGACTGTAACAATGTAAGTGGAGAGGATGGAGGATCTACAGATTCAGGTGAAGACTATATAAATGACAAAGGGACTTGGGAAGCACTTCAAAACACCGTCTCTTTTCCTTATAAAGTGGGAGACGTGCAGATTCTAAGCCTTGGAAATATAGTTGGAGATTCTACAGCTTTTCGGAATGGAAAATCCATCTGGCCTGAAGGGTACACAGCAATGAGGACGTTCACTTCAGTTACAGACCCTAAAGTATCCGTTCCGTATAAGATGGAGGTTTTGAGAGATCCAGAATCCAGATTCAGACCACTATTTAGAGTGACAGTTGATGGTGGTGAGCAGTTCAATGGTTATACACCGTCTACTTGCTGGAATCAAGTATACGAAAGGATAAAGAAATTGGAAAAGGTTGTTTCTGAAGGTTCTGTTGCTGATGGTGGGGTAGAAAGTGGCTATGAATCTGGCTCTGATATGTTTGGTTTCTCCAAACCGGAAGTGGCTGAACTTATAAAGGGATTATCTAAATCCAAAGTCTCTTTGAAGAAATCAATCCGCAAGTCAGGTTCCAGATTGCCTCTCGGTTATAGACAAGTTCATATTAATTGGTTTGATCTCGATAAGTGCAATGTGTGCCATATGGATGAGGAGTACGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGCTATGGAGAACTGGAACCTGTTAATGGAGTGCTATGGTTATGCAACTTATGTCGTTCGGGTGCTCCCCCACCTTGTTGCTTATGTCCACTCATAGGTGGTGCAATGAAGCCTACAACGGATGGCCGGTGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTTTGAGTAGAATCAGCAGGGACCGTTGGAAGTTGTTATGCAGCATATGTGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAACAATTCTTGTCGAGTAGCATATCATCCACTCTGTGCACGTGCAGCTGGTCTTTGCGTTGAGCTTGAGAATGAGGACAGGCTCTATCTACTTTCCGTAGATGATGATGAGGATCAGTGCATTCGCTTACTTTCTTTCTGCAAGAAACATAGGCAACCGTCTCATGATCATACTGTAGCTGACGAACGTGTGCCGGTTATTGGTCAATGTTCAGACTATGAACCACCACCCAATCCATCTGGTTGTGCCCGAAGTGAGCCATATGATTACTTTGGTAGGAGAGGCCGAAAAGAACCTGAAGCACTTGCAGCTTCATCACTGAAACGTTTGTTTGTGGAGAATCAACCTTACTTAGTTGGTGGATACTGCCAACATGGGTTGTTGAACGACCTAGAGCCTTCTGGCAGAGGAGTCTGCTCTAAATTCTTTTGCAGCGAACAGAGACTGAGAACCTCTATGGTTGATGCTGCTGACAGCATACTTACTGTTGCTGAGAAATATAAGTACATGAGGGAAACCTTTCGGAAACAGTTAGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCATATAAAGGCGGAGACATGGTGATTGAATACACTGGTGAACTTGTTAGACCTTCTATAGCTGACCGGAGAGAGCGGTTTATATACAATTCTTTGGTGGGTGCTGGAACATATATGTTTCGGATTGATGATGAACGAGTCATCGATGCCACTAGAGCAGGAAGCATTGCTCATTTAATTAATCATTCCTGTGCACCAAATTGCTATTCAAGAGTCATTAGTGTTAACGGCGATGAGCATATTATAATATTTGCAAAGAGGGACATTAAACAATGGGAAGAGCTTACATATGATTATAGATTTTTCTCAATAGATGAACGGCTTTCTTGTTACTGTGGCTTCCAAAAATGTCGAGGTATAGTAAATGATACTGAGGCAGAAGAGCGAGCTGCTACTGTATACGCACCGCGGAGTGAATTAGTTGATTGGAAAGGAGAATGA 3240 0.4296 MALPPNSDENGGGVATEEDTTIDIHTTHGTPIRYLPLDHLYSSTSPCSGSSNVMSKKVKARKLNSEIQFNNGEIDSSVNDEDDDEKEISKTTTSSMVVYDKPPLLYVYSRRRKRSSFPASERTVLKRRRIGSNELESLGIDWNSLEKFEGPRLRECRNQFGNSAGFNGNNSNKKKFGSGVKLPKSTPDSHTLKRWVTLSFDDADPEAFVGLRCKVYWPMDSKSYTGIVKRYDREAKIHHIEYDDGDEEKLVLSNENVKYHVSRNDMQRLKLSYAKVRDNNVSDYDVEEMLALAASMNDCQDFEPGDIVWAKLTGYAMWPAVVLDESLASNCKGLKTFIGGRSVPVQFFGTHDFARVRVQQVKSFLSGLLTDLHSKCKKQSFIEGIEEAKRYLNALELPLGMIELRKRCTTDDCNNVSGEDGGSTDSGEDYINDKGTWEALQNTVSFPYKVGDVQILSLGNIVGDSTAFRNGKSIWPEGYTAMRTFTSVTDPKVSVPYKMEVLRDPESRFRPLFRVTVDGGEQFNGYTPSTCWNQVYERIKKLEKVVSEGSVADGGVESGYESGSDMFGFSKPEVAELIKGLSKSKVSLKKSIRKSGSRLPLGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISRDRWKLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSHDHTVADERVPVIGQCSDYEPPPNPSGCARSEPYDYFGRRGRKEPEALAASSLKRLFVENQPYLVGGYCQHGLLNDLEPSGRGVCSKFFCSEQRLRTSMVDAADSILTVAEKYKYMRETFRKQLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPSIADRRERFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLSCYCGFQKCRGIVNDTEAEERAATVYAPRSELVDWKGE* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2932 1079 Gene3D - 292 397 - -
Tpr6g2932 1079 ProSiteProfiles Post-SET domain profile. 1039 1055 IPR003616 -
Tpr6g2932 1079 SMART PWWP_4 302 365 IPR000313 -
Tpr6g2932 1079 ProSiteProfiles PWWP domain profile. 304 367 IPR000313 -
Tpr6g2932 1079 ProSiteProfiles Extended PHD (ePHD) domain profile. 666 790 IPR034732 -
Tpr6g2932 1079 Gene3D - 205 255 - -
Tpr6g2932 1079 ProSiteProfiles Zinc finger PHD-type profile. 613 664 IPR019787 -
Tpr6g2932 1079 SUPERFAMILY SET domain 913 1052 IPR046341 -
Tpr6g2932 1079 Pfam PHD-finger 628 662 - -
Tpr6g2932 1079 MobiDBLite consensus disorder prediction 1 21 - -
Tpr6g2932 1079 MobiDBLite consensus disorder prediction 71 90 - -
Tpr6g2932 1079 PANTHER PHD FINGER PROTEINS 14 1076 - -
Tpr6g2932 1079 Pfam PHD-zinc-finger like domain 668 789 - -
Tpr6g2932 1079 ProSiteProfiles SET domain profile. 915 1033 IPR001214 GO:0005515
Tpr6g2932 1079 CDD ePHD_ATX1_2_like 669 789 IPR041956 -
Tpr6g2932 1079 SMART set_7 915 1039 IPR001214 GO:0005515
Tpr6g2932 1079 SUPERFAMILY FYVE/PHD zinc finger 607 676 IPR011011 -
Tpr6g2932 1079 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 792 IPR013083 -
Tpr6g2932 1079 SMART fyrc_3 512 600 IPR003889 GO:0005634
Tpr6g2932 1079 CDD SET_SETD1-like 902 1051 - -
Tpr6g2932 1079 SMART fyrn_3 460 504 IPR003888 GO:0005634
Tpr6g2932 1079 MobiDBLite consensus disorder prediction 163 184 - -
Tpr6g2932 1079 CDD PHD_ATX1_2_like 615 661 IPR042010 -
Tpr6g2932 1079 Pfam PWWP domain 305 392 IPR000313 -
Tpr6g2932 1079 Pfam F/Y-rich N-terminus 451 501 IPR003888 GO:0005634
Tpr6g2932 1079 SUPERFAMILY Tudor/PWWP/MBT 297 400 - -
Tpr6g2932 1079 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 14 1076 - -
Tpr6g2932 1079 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 607 662 IPR013083 -
Tpr6g2932 1079 Pfam SET domain 926 1032 IPR001214 GO:0005515
Tpr6g2932 1079 ProSiteProfiles FYR domain FYRN motif profile. 445 504 IPR003888 GO:0005634
Tpr6g2932 1079 ProSitePatterns Zinc finger PHD-type signature. 616 661 IPR019786 -
Tpr6g2932 1079 SMART PHD_3 615 662 IPR001965 -
Tpr6g2932 1079 SMART PHD_3 724 790 IPR001965 -
Tpr6g2932 1079 Gene3D - 446 586 - -
Tpr6g2932 1079 ProSiteProfiles FYR domain FYRC motif profile. 508 595 IPR003889 GO:0005634
Tpr6g2932 1079 Pfam F/Y rich C-terminus 510 583 IPR003889 GO:0005634
Tpr6g2932 1079 Gene3D SET domain 878 1068 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2932 Tpr-Chr6 31689725 31702404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2932 596 760 C2H2 Transcription Factor Family AT3G14740 38.596 4.83e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr6g2932 zf-HC5HC2H_2 5.1e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2932 - - gmx:100806736 1733