Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2930 ATGATAAGATCAACAGGGAGTGACATTTATTGTTACGATGTTTTTCTCAGCTCCAAAAGTTTAGACTCTAATTTCAATTTCACACATAATCTTTTTGCTTCCCTCCAAAAAAAAGGCCTTGTTACATTCAAGGATGACACTTATAAGCTCAACAAAGGTGAAACCATTGCACCAAAACTCCTTCGTGCAATTGAAGCCTCTCGAATTTTTATTGTCATCTTTACAAAGGACTATGCTTCCTCAACATGGTGCTTACGAGAATTGGAATATATCCTTCAATGTGTTCAAGTATCCGAAAGACGTGTTTTGCCTGTTTTCTATGACATCCATCCTTCGGAGGTGCGAAGGCAAAGTGGAAGTTATAAAAAAGCTTTTTGTGAACATGAAGAAAGATTCAAACACGATCCTGAGATGGTTCGGCGGTGGAGGGATGCTCTCACACAAGTCTCCCATATTTCTGGTTGGGATGTGCGTGATAAGTCACAATATGCGGAGATTGAAAAGATTGTTGATGCGATATTATATATATTGGATCACAAATTTTCAAGTGTTTCAAAAGATTTAGTTGGGGTGGATTCTCCTATAGAAGAATTGGAAAAGCTTTTACATTTGGACTCGGTTGATGATGTTCGGGTTGTAGGAATTTGTGGGATGGGTGGCATAGGGAAGACAACTATTGCTACTCTTTTATATGATCGAATCTCTCATCAATTTGATACATGTTGTTTTATTGAAAATTTTAACAAACTTTATAAGCACCAAGGTCCTATCGGTGCACATAAGCAAATTCTACGTCAGACTCTCAGCGAAAAACACCTTCAGGTATGCAATCTTCATGATGCAGCTGATTTGATATTGAGCAGACTACATCGAGCAAGGGCCCTAATAATTCTTGATAGTGTGGATCAAATTGACCAATTGTATAAAACAACTGTGAATCGCGAATGGTTAGGTCCAGGGAGTAGAATCATTATAATATCTAGACACGAACATGTCTTGAAGCTTTATGGTGTGGATGTGGTTTACAAAGTTCCGCTCTTGAACCAAACTAACTCTCTTCGATTATTTTGTCAAATACTTTCGAAACATGATCATATTATAAGTAGTCCTAAGCAACTGGCGCATGGCATACTAACTTATGCTGATGGTCTACCGCCGCTTGTAATTAAAGTATTGGGTTCATTTTTGTTTGGAAGATATATCTTTGAATGGAGAAGAGAACTGGCTAGGTTTAGAGAAAGTCCAAACTATATCATGGATGTGTTGCTGTTAAGTTTGGATGTGCTGGATAAAATGGAAAAACAAATATTTCTTGATATTGCTTGTTTTTTCAACGGCCGTGGAGAGGATTATGTCAAAAATATTCTAAATTCTTGTGGATTTTATGCCGATACTCAATTAATTGTTCTCATCGATAAATCAGTCATAAGCATTTCCGATGAATGTAAGATTGAAATGCATGCTTTGTTGGAAGAGCTAGGAAGAAAAATTGTTCGCGAAGATTCAAGCAAAAAGTGTAGCAGATTGTGGTTGCACAAACAATTCAACAATGTTATTTTGGAGAATATGGAAAACAATGTTGAAGCTATAGTTTTGCATGGAAATGAAAGAGATGCAGAAACATTGATGGCCGACGCATTGTCTAAAATGAGTCGTCTTAGATTGCTCATACTCAAGGATGTTAAATTCTCAGGAAGCCTTGACAACCTTTCTAATGAATTAAGATATGTTTCATGGGACAGATATCCTTTCAAGGATTTGCCATCAAGTTTTCAGCCTCATGAACTTGTTGAATTGATCTTGGTAGATAGCAACATCAAACAACTATGGGAAGGCAATAAGAATCTACCCAATTTGAAGACATTGGATCTAAGTTACTCTGAAAATCTAACCAAGATGCCATATTTTGGAGAGTTCCCAAATCTTGAACACCTAAATTTTGAAGGATGTATAAAACTTGTGCAAATAGATCCATCTATCGTTCTTCTAAGAAAACTTGCTTTCTTAAATTTGAAGAATTGCAAAAGTCTTACTATATGCATACCCGATGAAATATTCGGTCTCCCCTTACTTAAATATTTAAATCTTGCCGGTTGTTCCAAAGCGTTTAAAAATCCCATCGCGCGTGAAGGTTTTGCTAGTTGTTTTTTGCCTTCGCCTTCCTTGCCTAGTTTCTCTTGTTTGAGTGAACTTGATATTAGTTTTTGCAGTCTAAGCCAAATCCCCGATTCTCTTGGATGTCTACCTAGCTTAGAAAGATTAAATTTAAGGGGAAATAATTTCGTCACCTTGCCTAGCCTTCGCGATCTTTCCAAACTTGAATATTTAAATTTGGAGCATTGCAAGAATTTGAAATCTTTGAATGGTCTCCCTTCACCCATTTCTTTTAAGCCGGATAAATATAAGCGAGCAGGGATGTATATTTTCAACTGTCCAGAATTGGGTAAAAGGGAACACTGCATTAGTATGACTTTTTCATGGATGATGCAATTCATTCTAGCAAACCTAGATTCCTCCGACTCCTTTCATCAAATTGATATTGTTATTCCCGGAAGTGAAATTCCAAGGTGGTTCAACAATCGAAGAATGGGTCGATCAATAAGCATGGACCCATCTCCGATTGTATATGACAATAATATCATTGGCATTGCTTGTTGTGTCGTATTTTCTGTGGCACCTTTTGATCCAACTACGACAATATACGAACGGGGACCTATAATACGGTTAGGTTTTAAAAGCAACAATGCGATCAATAGCCATTATGTTGTCATCCCAGTAACTCTCTATAGATATCTTATAAGGGTCAAGTCAAATCACACGTGGATAATTTATTTTCCGCGTGAATCATTCTTTAGTTTTTTGAGATGTATAGACAATACACTTTGGGATCTTGATCATATCAAAATGGAAGCTTCTTCTATGAATGGTCAAGGCTTACATCTAGAAGTAAAGAATTGTGGGTATAGTTGGGTGTGCAAACAAGATCTACAACCATTTTTGAATTAA 3006 0.3673 MIRSTGSDIYCYDVFLSSKSLDSNFNFTHNLFASLQKKGLVTFKDDTYKLNKGETIAPKLLRAIEASRIFIVIFTKDYASSTWCLRELEYILQCVQVSERRVLPVFYDIHPSEVRRQSGSYKKAFCEHEERFKHDPEMVRRWRDALTQVSHISGWDVRDKSQYAEIEKIVDAILYILDHKFSSVSKDLVGVDSPIEELEKLLHLDSVDDVRVVGICGMGGIGKTTIATLLYDRISHQFDTCCFIENFNKLYKHQGPIGAHKQILRQTLSEKHLQVCNLHDAADLILSRLHRARALIILDSVDQIDQLYKTTVNREWLGPGSRIIIISRHEHVLKLYGVDVVYKVPLLNQTNSLRLFCQILSKHDHIISSPKQLAHGILTYADGLPPLVIKVLGSFLFGRYIFEWRRELARFRESPNYIMDVLLLSLDVLDKMEKQIFLDIACFFNGRGEDYVKNILNSCGFYADTQLIVLIDKSVISISDECKIEMHALLEELGRKIVREDSSKKCSRLWLHKQFNNVILENMENNVEAIVLHGNERDAETLMADALSKMSRLRLLILKDVKFSGSLDNLSNELRYVSWDRYPFKDLPSSFQPHELVELILVDSNIKQLWEGNKNLPNLKTLDLSYSENLTKMPYFGEFPNLEHLNFEGCIKLVQIDPSIVLLRKLAFLNLKNCKSLTICIPDEIFGLPLLKYLNLAGCSKAFKNPIAREGFASCFLPSPSLPSFSCLSELDISFCSLSQIPDSLGCLPSLERLNLRGNNFVTLPSLRDLSKLEYLNLEHCKNLKSLNGLPSPISFKPDKYKRAGMYIFNCPELGKREHCISMTFSWMMQFILANLDSSDSFHQIDIVIPGSEIPRWFNNRRMGRSISMDPSPIVYDNNIIGIACCVVFSVAPFDPTTTIYERGPIIRLGFKSNNAINSHYVVIPVTLYRYLIRVKSNHTWIIYFPRESFFSFLRCIDNTLWDLDHIKMEASSMNGQGLHLEVKNCGYSWVCKQDLQPFLN* 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2930 1001 ProSiteProfiles Leucine-rich repeat profile. 750 771 IPR001611 GO:0005515
Tpr6g2930 1001 SUPERFAMILY L domain-like 537 795 - -
Tpr6g2930 1001 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 155 IPR035897 -
Tpr6g2930 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 440 IPR027417 -
Tpr6g2930 1001 SUPERFAMILY "Winged helix" DNA-binding domain 418 518 IPR036390 -
Tpr6g2930 1001 Gene3D - 180 340 IPR027417 -
Tpr6g2930 1001 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 183 702 IPR044974 GO:0006952
Tpr6g2930 1001 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 724 951 IPR044974 GO:0006952
Tpr6g2930 1001 SMART till_3 11 152 IPR000157 GO:0007165
Tpr6g2930 1001 Pfam NB-ARC domain 203 410 IPR002182 GO:0043531
Tpr6g2930 1001 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 724 951 - -
Tpr6g2930 1001 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 183 702 - -
Tpr6g2930 1001 Pfam Leucine rich repeat 728 782 IPR001611 GO:0005515
Tpr6g2930 1001 Gene3D Ribonuclease Inhibitor 502 799 IPR032675 -
Tpr6g2930 1001 Gene3D - 7 179 IPR035897 -
Tpr6g2930 1001 Pfam C-JID domain 849 996 IPR045344 -
Tpr6g2930 1001 ProSiteProfiles TIR domain profile. 10 177 IPR000157 GO:0007165
Tpr6g2930 1001 Gene3D - 346 430 IPR042197 -
Tpr6g2930 1001 Pfam TIR domain 12 173 IPR000157 GO:0007165
Tpr6g2930 1001 PRINTS Disease resistance protein signature 212 227 - -
Tpr6g2930 1001 PRINTS Disease resistance protein signature 288 302 - -
Tpr6g2930 1001 PRINTS Disease resistance protein signature 382 396 - -
Tpr6g2930 1001 PRINTS Disease resistance protein signature 614 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2930 Tpr-Chr6 31673934 31682206 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2930 12 785 WRKY Transcription Factor Family AT4G12020 33.210 8.40e-89 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2930 - - mtr:MTR_4g081270 1258.82