Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2887 ATGATGATTTCGAGAGGTTTGTTCGGGTGGTCCCCACCGCACGTACAACCGCTCACACCGGTTTCGGAGGTATCGGAGCCACCGGAATCTCCGTCACCATATGTAGACCCCGGAGCTGATACCTCCACGTCGCAACAGGTGGAAGTTGAAGAGGAAATGGAGGAACAAGAGGAAATGGAACCGGCGCCAGCTGCGGTACCTTTCTCGAAGCTTTTTGCGTGTGCTGATCGGTTTGATTGGTTTCTCATGGCGGTTGGTTCTGTTGCTGCTGCGGCTCATGGAACCGCTCTTGTAGTTTACTTGCATTACTTTGCTAAGATTATTCATATTATGCGGATGGATGATCAGCCGTATACGTCGCAGGAGCGGTTTGATAGGTTCACTGAGCTTGCTTTAACCATTGTTTACATTGCAGCGGGAGTTTTTGCTGCTGGTTGGATTGAGGTTTCATGTTGGATTTTGACTGGAGAACGACAAACTGCTGTCATCAGGTCCAAATATGTCCAAGTATTACTAAATCAGGATATGAGTTTTTTCGATACTTACGGGAATAATGGAGACATTGTGAGTCAAGTATTGAGTGATGTGCTGCTTATCCAGTCTGCTCTTAGTGAAAAAGTTGGAAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTCATTGGCCTTATCAATTGTTGGCAGATTGCTTTGATAACATTAGCAACAGGTCCTTTTATTGTTGCCGCAGGAGGAGTATCAAATATATTCCTCCATAGACTTGCAGAGAATATCCAAGATGCATATGCTGAAGCAGCTAGCATTGCTGAACAGGCAGTTTCCTATGTAAGGACATTATATGCATTTACAAATGAAACGTTGGCCAAGTACTCATATGCAACATCACTGCAAGCTACTCTTAGATATGGAATATTAATAAGTCTTGTTCAAGGGCTAGGTCTTGGATTCACGTATGGACTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGATTTTTGGTTATTCACGGAAAAGCGCATGGCGGTGAAATAGTAACGGCTCTTTTTGCTGTAATTCTAAGTGGCCTGGGATTGAATCAAGCAGCAACAAATTTCTACTCCTTTGAACAAGGGCGGATAGCTGCTTATAGATTATATGAGATGATAAGCCGGTCATCCTCATCTGTTAATGATGATGGCACTTCCCTTGACTCTGTGCAAGGAAATATAGAGTTTCGGAATGTTTATTTCAGCTATCTGTCTCGTCCCGAAATCCCTATCTTGAGTGGATTTTATCTCACTGTACCTTCTAAGAAAGCTGTAGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTTTATGATCCTACGTTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAATTTGGAATGGCTGAGGAGCCAGATAGGACTAGTTACCCAGGAGCCTGCTTTGCTCAGTTTGAGTATAAGAGATAACATTGCTTATGGGAGGGATGTCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCACGCACATACATTTATCAGCTCATTGAAGAAAGGTTATGACACACAGGTTGGCAGGGCAGGTTTAGCTTTGACCGAAGAGCAGAAAATAAAACTTTCTATTGCAAGAGCTGTGCTTCTAAATCCATCAATTCTTCTGCTTGATGAAGTAACTGGTGGACTTGATTTTGAGGCTGAGAAGGCTGTTCATGAGGCTCTGGATATGCTTATGTTGGGACGCTCAACAATAATAATTGCTCGAAGGCTTAGTCTCATAAGAAATGCTGATTATATAGCTGTTATGGAGGAGGGTCAACTCGTTGAAATGGGTACTCATGATGAATTGTTGAACCTGAATGGCTTATATGCAGAGCTTCTACGAGGTGAAGAGGCAGCAAAACTTCCCAAGCGGATGCCTACTCGAAACTACAAGGAGACTGCAGCATTTCAAATTGAGAATGATTCTTCAGTGAGCCATAACTTGAATGAACCATCATCCCCCAAAATGATGAAGTCACCCTCTCTTCAAAGAATTTCTAATGTATCACATTCGCGACGACCTTCAGATATCATCTATAACTTTCAAGAATCGTTGAGTCCATCATCCGAGAATGTGCTGGAAAATGGTCAAGCTCCGGATGCAGATGATAAGGAGCCATCCATAAGAAGGCAGGATAGTTTTGAAATGAGACTGCCAGAGTTACCCAAGATTGATATACAGTCTGTGCCTCGGCAAAAATCAAATGGTTCTGACCCAGAATCCCCCATTTCACCATTTTTAACATCTGATCCTAAGAAAGAACGTTCCCATTCACAAACTTTTAGTAGACCACATAGTCATTCTGATGATGCTTCAGTTACAACGAGAGAAAAAAGGGAAGCACAGAAGCGGAAACCACCATCACTTCAGAAGTTGATCGAGCTTAGTTTTGCCGAGTGGCTTTATGCTCTGTTAGGAAGCATTGGCGCTGCTGCCTTTGGTTCATTCAATCCCCTTCTAGCTTATGTTGTTGGCCTTGTGGTGGCAGCTTACTATAGAATTGATGATCAACATCACTTAGCACAGGAGGTAGACAAGTGGTGCTTGATCATTGGCTGCATGGGTATTGTAACAGTTATTGCCAACTTTTTGCAGCATTTCTATTTTGGTATTATGGGAGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTAAGGAATGAAGTAGGATGGTTTGATGATGAGGAAAACAGTGCTGACAATTTATCCATGAGATTGGCCAATGATGCTACTTTTGTCAGAGCTGCTTTTAGCAATCGACTTTCCATATTTATACAGGACAGTGCTGCAGTTATCGTTGGCCTTCTCATTGGTGCTGTGCTGCACTGGCGGTTAGCACTGGTGGCTTTTGCAACCCTTCCAATTCTCTGTATTTCTGCAGTTGCCCAGAAATTGTGGCTAAATGGATTTTCAAGGGGCATACAGGAAATGCACAGAAAAGCATCTTTGGTTCTCGAAGACGCAGTTAGAAATATATACACTGTTGTTGCATTTTGTGCTGGCAATAAGGTAATGGAGCTCTATAGGATGCAATTAAAAAAAATATTTAAGAAGAGCTTTCTTCATGGGATGGCGATTGGTTTTGCATTCGGCTTTTCACAGTTTCTACTTTTTGCCTGTAATGCCCTTCTACTTTGGTACACCGCGGTATGTATTAAAAATGGTTACATAAATCCATCCACCGCACTGAGGGAGTACATGGTTTTCTCATTTGCCACATTTGCCCTAGTGGAGCCTTTTGGATTGGCTCCTTACATACTTAAACGGAGAAAATCCCTTATATCAGTGTTTGACATTATAGACCGTGAGCCTAAAATTGATCCTGATAACAACACAGCGTTGAAGCCACCCAACGTATATGGAACCATTGAGTTAAAACATGTTGATTTTTGTTATCCGTCTCGTCCTGAAGTGTTGGTATTGAGCAATTTTAGTCTCAAAGTGAATGGGGGTCAAACAGTTGCTGTTGTTGGAGTTTCAGGGTCAGGAAAGAGCACTATAATATCTTTGATCGAGAGATTTTATGATCCAGTTGCGGGGCAAATTTTACTCGATGGAAGGGATTTAAAGCTCTATAACTTGAGATGGTTAAGGAGCCACCTCGGTTTAATTCAACAGGAACCTATTATCTTCTCATCAACCATAAGGGAAAACATTATATATGCAAGGCATAATGCTAGTGAAGCTGAGATGAAAGAGGCAGCGAGAATAGCAAATGCTCATCATTTTATTAGCAGCTTGCCTCATGGTTATGACACTCATATTGGGATGAGAGGTGTTGACTTAACCCCAGGACAGAAACAGAGAATTGCAATTGCAAGGGTAGTGCTGAAAAATGCACCTATCTTGTTGTTGGATGAAGCAAGTTCATCAGTTGAATCCGAGTCAAGCCGAGTGATACAAGAAGCTCTAGACACACTAATAATGGGAAACAAGACCACTGTTTTAATAGCGCATAGAGCTGCAATGATGAGACACGTGGACAATATTGTAGTGCTTAATGGAGGACGAATAGTGGAAGAGGGAAGTCATGATTCGTTGGTGGCAAAGAATGGTCTGTATGTCCGATTGATGCAACCTCATTTTGGTAAGGCTATACGTCAGAATCGGCTTGTTTAG 4212 0.4193 MMISRGLFGWSPPHVQPLTPVSEVSEPPESPSPYVDPGADTSTSQQVEVEEEMEEQEEMEPAPAAVPFSKLFACADRFDWFLMAVGSVAAAAHGTALVVYLHYFAKIIHIMRMDDQPYTSQERFDRFTELALTIVYIAAGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGLINCWQIALITLATGPFIVAAGGVSNIFLHRLAENIQDAYAEAASIAEQAVSYVRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIVTALFAVILSGLGLNQAATNFYSFEQGRIAAYRLYEMISRSSSSVNDDGTSLDSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPSKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLNLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDVTMDQIEEAAKIAHAHTFISSLKKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAEKAVHEALDMLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLNLNGLYAELLRGEEAAKLPKRMPTRNYKETAAFQIENDSSVSHNLNEPSSPKMMKSPSLQRISNVSHSRRPSDIIYNFQESLSPSSENVLENGQAPDADDKEPSIRRQDSFEMRLPELPKIDIQSVPRQKSNGSDPESPISPFLTSDPKKERSHSQTFSRPHSHSDDASVTTREKREAQKRKPPSLQKLIELSFAEWLYALLGSIGAAAFGSFNPLLAYVVGLVVAAYYRIDDQHHLAQEVDKWCLIIGCMGIVTVIANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLIGAVLHWRLALVAFATLPILCISAVAQKLWLNGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRMQLKKIFKKSFLHGMAIGFAFGFSQFLLFACNALLLWYTAVCIKNGYINPSTALREYMVFSFATFALVEPFGLAPYILKRRKSLISVFDIIDREPKIDPDNNTALKPPNVYGTIELKHVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQILLDGRDLKLYNLRWLRSHLGLIQQEPIIFSSTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHIGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSVESESSRVIQEALDTLIMGNKTTVLIAHRAAMMRHVDNIVVLNGGRIVEEGSHDSLVAKNGLYVRLMQPHFGKAIRQNRLV* 1404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2887 1403 SUPERFAMILY ABC transporter transmembrane region 814 1139 IPR036640 GO:0005524|GO:0016021
Tpr6g2887 1403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 641 IPR027417 -
Tpr6g2887 1403 MobiDBLite consensus disorder prediction 755 771 - -
Tpr6g2887 1403 CDD ABC_6TM_Pgp_ABCB1_D2_like 826 1137 - -
Tpr6g2887 1403 Pfam ABC transporter 428 572 IPR003439 GO:0005524
Tpr6g2887 1403 Pfam ABC transporter 1172 1320 IPR003439 GO:0005524
Tpr6g2887 1403 MobiDBLite consensus disorder prediction 18 56 - -
Tpr6g2887 1403 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 831 1123 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr6g2887 1403 MobiDBLite consensus disorder prediction 724 746 - -
Tpr6g2887 1403 Gene3D ABC transporter type 1, transmembrane domain 769 1000 IPR036640 GO:0005524|GO:0016021
Tpr6g2887 1403 Gene3D ABC transporter type 1, transmembrane domain 1002 1151 IPR036640 GO:0005524|GO:0016021
Tpr6g2887 1403 PANTHER ABC TRANSPORTER B FAMILY 19 1399 - -
Tpr6g2887 1403 Gene3D - 1152 1391 IPR027417 -
Tpr6g2887 1403 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1154 1391 IPR003439 GO:0005524
Tpr6g2887 1403 MobiDBLite consensus disorder prediction 665 697 - -
Tpr6g2887 1403 Gene3D - 397 644 IPR027417 -
Tpr6g2887 1403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1143 1390 IPR027417 -
Tpr6g2887 1403 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 374 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr6g2887 1403 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 382 - -
Tpr6g2887 1403 SUPERFAMILY ABC transporter transmembrane region 70 382 IPR036640 GO:0005524|GO:0016021
Tpr6g2887 1403 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 407 642 IPR003439 GO:0005524
Tpr6g2887 1403 SMART AAA_5 1181 1368 IPR003593 -
Tpr6g2887 1403 SMART AAA_5 434 747 IPR003593 -
Tpr6g2887 1403 Coils Coil 39 59 - -
Tpr6g2887 1403 MobiDBLite consensus disorder prediction 777 812 - -
Tpr6g2887 1403 MobiDBLite consensus disorder prediction 714 812 - -
Tpr6g2887 1403 Gene3D ABC transporter type 1, transmembrane domain 70 657 IPR036640 GO:0005524|GO:0016021
Tpr6g2887 1403 Coils Coil 253 273 - -
Tpr6g2887 1403 PANTHER ABC TRANSPORTER B FAMILY MEMBER 20-RELATED 19 1399 - -
Tpr6g2887 1403 Pfam ABC transporter transmembrane region 86 357 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr6g2887 1403 Pfam ABC transporter transmembrane region 837 1099 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2887 Tpr-Chr6 31272506 31282376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2887 60 716 Calmodulin-binding Proteins AT2G36910 43.328 5.48e-167 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2887 K05658 - gmx:100789116 2402.86