Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2884 ATGCCTCCAAAATATAATTCTATTTCTGAAATTTCTCCATCCAAAGAAACATGGAATGTATTGGTTAGAATTGTTCGCATGTGGTTTGTTAAAGATATGAAAAGAGATGCGCTGCCGTATTCTTTAGAAATGGTTTTGATGGATAAGAAGGGTGAAAAGATCCATGCAACAGTTCGAAGAACATTAATTTACAAATATGAAAAGGAACTCACTGAGGGTCATGTGTATTCCATAAGCAACTTTAGTGTTGCCACTAATGTGGGATCATATAGAACCACCAATCATGCCTATAAAATTAATTTTCAATTTGGAACTAAAATCAAAAAATTTGATGACAAGTTGATACCTGCTAATATATACATGATCAGTGAACCTCATAAGATTTTTAATGATAACTATGATACCGATTATTTGATAGATGTGATGGGAGTCTTGAAAGCTGTGGGTGTTGAAAAGGTTTATTCTCGAAATGGAAGCGAATCAAAGATGATTCCTATAGAGCTGAACTACGATGGATTCTGTTTCAAAGTTACACTCTTTGGACCTTATGCGGACGAGTTGAACGCTTTTATCGCATCTGGTGAAGCAGATAATGCTGTCGTTGCTGTTTTGTTGGCCAAAGTCAAAATGTTCCAAGGTCAACCAACTATTCAAAACACCATATATGCCACTAAACTGGTTTTCAATCCTGTTTACACATCTGCCGTTGATCTCAAGAAAAGGATGCTTGGGAAAAGTGCTACTCCATCACCTGGTATTTCTCTATTAAAAGATACTTCTAAAGTTAGCAATGAGGATGATTTTCTCAATTTGACGCCAATGGCAACTATTGAGGGAGTTAAGGATTGTAGTGTGGAAAAGACATTTGCTGTATTTGGTACGGTGAAGTTTATCGATGGTTCTGAATGGTGGTACACTGCGTGCACCTGTAATAAAAAAGTTTATCCAGATGAGCGTATGTACTTTTGTCCTAAGTGCAACAAGCATGTCATCAACGTCTCTCCAAGGTACATGATTAAGGTCAAAGTTATTGACCATACTGATTCTGCTACCTTTCTCATTTTTGATCGTGATGCTACCGATCTATTCAATAAATCTTGTGCTGATATGATCGAAGCTTTTGGGATGGGTAATTTGGCCGATATTCCAGAAGAGATTGGTGATCTGGTTGATAAGTCATATCTTTTTAAGGTTGAAACCAATGTTGATCCTTCTGGCATGTACGAAAAATCTTTTAAGGTCAAGAAGATTGTGGCCGACCCTGTTTTGATTGAAAAGTTCAAAGCTAAATATGTAGAATCTTTGAAAAATAACATCGCTGGTGATGAGGGTGTTGTTGATGCTGAAGACACAAATGTGGTTGGTGATGATGGAATTTTGAATCATACTAAACGCGACAATGTAGTTGATGGTGTAAGTCTGAAGGACGATAATACAACTGCTGAGGTGACTCAGAATCTGATGGCAAAATTTTCTGAAAGTTCTGCTGTTGAATCTACTAAGCACGCTGATGCTGAAAATGTGGAAAACACCATAGATCCAACAAAGGACATTGGGCTAATTACTCCAGCGAAGCAATCCCACGCTTTGGTGGAAAAGTTCAAAGCTACATATGTAGAATCTTTGAAAAATAACATTGCTGGTGACGAGGGTGTTGTTGATGCTGAAGACGCAAATGTGGTTGGTGATGATGGAATTTTGAATCATACTGAACGCGACAATATAGTTGATGGTGTAGGTCTGAAGGACCATAAAACAACTGCTGAGGTCTGA 1773 0.3768 MPPKYNSISEISPSKETWNVLVRIVRMWFVKDMKRDALPYSLEMVLMDKKGEKIHATVRRTLIYKYEKELTEGHVYSISNFSVATNVGSYRTTNHAYKINFQFGTKIKKFDDKLIPANIYMISEPHKIFNDNYDTDYLIDVMGVLKAVGVEKVYSRNGSESKMIPIELNYDGFCFKVTLFGPYADELNAFIASGEADNAVVAVLLAKVKMFQGQPTIQNTIYATKLVFNPVYTSAVDLKKRMLGKSATPSPGISLLKDTSKVSNEDDFLNLTPMATIEGVKDCSVEKTFAVFGTVKFIDGSEWWYTACTCNKKVYPDERMYFCPKCNKHVINVSPRYMIKVKVIDHTDSATFLIFDRDATDLFNKSCADMIEAFGMGNLADIPEEIGDLVDKSYLFKVETNVDPSGMYEKSFKVKKIVADPVLIEKFKAKYVESLKNNIAGDEGVVDAEDTNVVGDDGILNHTKRDNVVDGVSLKDDNTTAEVTQNLMAKFSESSAVESTKHADAENVENTIDPTKDIGLITPAKQSHALVEKFKATYVESLKNNIAGDEGVVDAEDANVVGDDGILNHTERDNIVDGVGLKDHKTTAEV* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2884 590 SUPERFAMILY Nucleic acid-binding proteins 132 241 IPR012340 -
Tpr6g2884 590 SUPERFAMILY Nucleic acid-binding proteins 4 112 IPR012340 -
Tpr6g2884 590 Gene3D - 124 245 IPR012340 -
Tpr6g2884 590 CDD RPA1_DBD_A_like 22 107 - -
Tpr6g2884 590 Gene3D - 259 437 IPR012340 -
Tpr6g2884 590 Gene3D - 5 123 IPR012340 -
Tpr6g2884 590 Pfam Replication factor-A C terminal domain 289 404 IPR013955 -
Tpr6g2884 590 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 371 - -
Tpr6g2884 590 CDD RPA1_DBD_B_like 140 242 - -
Tpr6g2884 590 Pfam Domain of unknown function DUF223 43 138 IPR003871 -
Tpr6g2884 590 CDD RPA1_DBD_C 289 426 IPR013955 -
Tpr6g2884 590 PANTHER REPLICATION FACTOR A 1, RFA1 20 371 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr6g2884 590 SUPERFAMILY Nucleic acid-binding proteins 273 415 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2884 Tpr-Chr6 31257228 31261038 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2884 2 370 Core DNA Replication Machinery Family AT4G19130 23.038 4.15e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2884 - - mtr:MTR_2g048560 648.662