Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2882 ATGATGAAGAGGGAAAGAGAGATTGATAGCATAACCATGGCAAATTGTTTGATGTTACTTTCTCGTGGAAGTGATGAATTTGAAGCCACATATTCATCTACCATAACTTCAAATAATCGTGTGTTTGAATGCAAAACATGTAATAGACAATTCTCTTCATTTCAAGCACTTGGTGGTCATAGGGCAAGTCACAAGAAACCAAGGTTGATGGGTGAAAATATTGATGGTGAATTGCTAAATACACCCCCAAAGCCTAAAACACATGAGTGTTCTATTTGTGGATTGGAGTTTGCAATAGGACAAGCTTTAGGTGGACATATGAGGAGACATAGATCTTCAAATTTGAATGGAAATAACAATATGCATAAATCTAATCATACTATGAGTTATAGTAGTGGGGGTGATGGTAGTAGTCTTGATTCTTCACAAAAGATGAAAGGTAGAAACAAGAGAGTTTTGGTTTTGGATCTTGATTTGAACTTGACTCCCTTTGAGAATGATTTGGAGATTATGAAGATTGGAAGAGCAACTACTAATTTGATTGATTTTTTGCATTGA 558 0.353 MMKREREIDSITMANCLMLLSRGSDEFEATYSSTITSNNRVFECKTCNRQFSSFQALGGHRASHKKPRLMGENIDGELLNTPPKPKTHECSICGLEFAIGQALGGHMRRHRSSNLNGNNNMHKSNHTMSYSSGGDGSSLDSSQKMKGRNKRVLVLDLDLNLTPFENDLEIMKIGRATTNLIDFLH* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2882 185 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Tpr6g2882 185 PANTHER ZINC FINGER PROTEIN ZAT5 12 171 - -
Tpr6g2882 185 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Tpr6g2882 185 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Tpr6g2882 185 Gene3D Classic Zinc Finger 22 77 - -
Tpr6g2882 185 Gene3D Classic Zinc Finger 78 149 - -
Tpr6g2882 185 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Tpr6g2882 185 PANTHER ZINC FINGER PROTEIN ZAT12 12 171 - -
Tpr6g2882 185 Pfam C2H2-type zinc finger 41 67 - -
Tpr6g2882 185 Pfam C2H2-type zinc finger 88 112 - -
Tpr6g2882 185 SMART c2h2final6 88 110 IPR013087 -
Tpr6g2882 185 SMART c2h2final6 42 64 IPR013087 -
Tpr6g2882 185 SUPERFAMILY beta-beta-alpha zinc fingers 40 110 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2882 Tpr-Chr6 31240638 31241474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2882 2 182 C2H2 Transcription Factor Family AT2G37430 44.792 1.36e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr6g2882 zf-C2H2_6 7.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2882 - - gmx:100500371 267.7