Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2879 ATGGAGTTTCAGAATGATCGACGTCATTGGAATGTTGAAATGATGTACATGAAGAAGGTGATGACTGATGAACAAATAGAAACACTTCGTAAACAAATCGCTGCTTATGGAACTATTTGTGAACAACTCGTTCAAATGCATCATAAAACTATCTCTTCTCACCAAAATCTTACTGGGGCTAGGCTGAGAGGTATGTGTTTTGACCCGATGATCACCAAAATAGGTTCGAGGCAGCGTTGGACACCAACCCCTCTGCAGCTTCAAACTCTGGAGCGAGTATTTAAAGCTGAAACGGGGACTCCAAGCAAGGAAATGATAAAGGAGTTAACCGCTAATTTAACTAAGCACGGGGAGATTTCTGAGACCAATGTATATAATTGGTTTCAGAATAGGCGTGCTAGGTCAAAGAGAAAGCAGCAGAGTTCGACGCCTACTAGTGTTAGTACGGAACCAGAGGTGCCAGCCGAGGTTGATTCCAAAGACAAGAAGACTAAACCGGATGATTTAGTTGCGTTTCAGCCTGCTGAAAATTTGTTCAACAATGTGTGCTGTGGCTCCCAGTACTTAAATCCAGAATCAGATGACAGTTTGCGATCCTCAAAAAATTTTGATCATGTGGCTGCTATCGATGAGATGCTATCAAACTCAAGGAGCAGCGATTATCTTGTTGAAAATTTGGAAGCACCCGAGAACAAGAACATAGAAGGTTAA 711 0.4205 MEFQNDRRHWNVEMMYMKKVMTDEQIETLRKQIAAYGTICEQLVQMHHKTISSHQNLTGARLRGMCFDPMITKIGSRQRWTPTPLQLQTLERVFKAETGTPSKEMIKELTANLTKHGEISETNVYNWFQNRRARSKRKQQSSTPTSVSTEPEVPAEVDSKDKKTKPDDLVAFQPAENLFNNVCCGSQYLNPESDDSLRSSKNFDHVAAIDEMLSNSRSSDYLVENLEAPENKNIEG* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2879 236 ProSiteProfiles 'Homeobox' domain profile. 73 138 IPR001356 GO:0003677
Tpr6g2879 236 PANTHER - 1 234 - -
Tpr6g2879 236 MobiDBLite consensus disorder prediction 131 165 - -
Tpr6g2879 236 Gene3D - 79 144 - -
Tpr6g2879 236 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 234 IPR044559 GO:0003700
Tpr6g2879 236 SUPERFAMILY Homeodomain-like 70 140 IPR009057 -
Tpr6g2879 236 SMART HOX_1 75 142 IPR001356 GO:0003677
Tpr6g2879 236 CDD homeodomain 77 139 IPR001356 GO:0003677
Tpr6g2879 236 Pfam Homeodomain 77 137 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2879 Tpr-Chr6 31222022 31225497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2879 15 234 Wox Gene Family AT4G35550 46.725 2.62e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Tpr6g2879 Homeodomain 1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2879 - - gmx:100784355 246.128