Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2875 ATGGCCGCCGGCATGGACATGTCACTAGACGAACTCATCAACAAATCCACCGCTCGCCGCAAAAACAACGCCGTTCACGGTCACGGACCAAACCGCCACCTCGCCGTTCGTAATCCGGTCAGAATGATGCCGTACTCCGTTTCTCAGCCTCAGGAAGTGATGAAAATGCAGGTTGCGAGAGAAGAATGGAGAAGAAGTAGTGTTGATGTTCAAGAAATGGTTTTGGATCATGGTGCTGTTCAAACCAAACCTATCACTAAACTCTATCTTTCTAACTTGGATCAAAGGGTTACCGATGAAGACATTCATCTGTTGTTCTTAGAAGAGGGTGAGTTGGAAAGATATTCCATTCACTATGATCAGTTTGGGAGATCAAAAGGAACAGCAGAAGTTGTCTTTACAAGGCAGTCTGATGCTTTAGCAGCCCTCAAGAGGTACAACAATATGAAGCTTGATGGAAAGACATTGCAAATTGAGCTTGTTGGATCAAGTTTGGTTACTACTGCTGCCGCCACAACACCTCTTGATAGCATACTGGGAAGACCAAATAATGGCTTTGTAAGGTGTGGAATTCCGATTCCTGGTCTTATGAACTCTGGAACAAGTTTGGTTACTCCTGCTGATATGCCTCCTGCTCTTGGTCGTAGTAGCTTACTGGGAATACCAAGTGATGTCTTTGTAAGGGAAGAGAGAAAGATTAATAGCTTTGCACATGGTCATCTTCCAAGAGCGAAGGTCCATACACAAAAGGCATCTTTTAAAGATATTGATCATGGCTTTGAGAGGTATCGCCGCCGTGTACAAGCAAAACGCCATATTCCAAAGCTGTCTGTTGAAGATCTTGATGAAGACTTGGAGAAGTATCGCTCAGAAGCTAAGCAGATATGCAAAAAAAATTGA 900 0.4389 MAAGMDMSLDELINKSTARRKNNAVHGHGPNRHLAVRNPVRMMPYSVSQPQEVMKMQVAREEWRRSSVDVQEMVLDHGAVQTKPITKLYLSNLDQRVTDEDIHLLFLEEGELERYSIHYDQFGRSKGTAEVVFTRQSDALAALKRYNNMKLDGKTLQIELVGSSLVTTAAATTPLDSILGRPNNGFVRCGIPIPGLMNSGTSLVTPADMPPALGRSSLLGIPSDVFVREERKINSFAHGHLPRAKVHTQKASFKDIDHGFERYRRRVQAKRHIPKLSVEDLDEDLEKYRSEAKQICKKN* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2875 299 PANTHER THO COMPLEX SUBUNIT 4A 5 291 - -
Tpr6g2875 299 Coils Coil 278 298 - -
Tpr6g2875 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 163 IPR000504 GO:0003723
Tpr6g2875 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 156 IPR000504 GO:0003723
Tpr6g2875 299 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 291 - -
Tpr6g2875 299 SUPERFAMILY RNA-binding domain, RBD 80 160 IPR035979 GO:0003676
Tpr6g2875 299 Gene3D - 19 160 IPR012677 -
Tpr6g2875 299 SMART rrm1_1 87 159 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2875 Tpr-Chr6 31160573 31163648 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2875 88 161 Eukaryotic Initiation Factors Gene Family AT2G23350 37.838 1.35e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2875 K12881 - gmx:100785926 201.06