Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2831 ATGGCCGACACTGAGGATATTCAACCACTTGTTTGTGACAATGGAACTGGAATGGTTAAGGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTCTTTCCCAGCATTGTTGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGTCAAAAAGATGCATATGTTGGTGACGAGGCACAATCTAAGAGGGGTATTTTGACTCTCAAATACCCTATTGAACATGGAATTGTTAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCCCCAGAAGAGCACCCAGTTCTGCTAACTGAGGCTCCCCTCAACCCTAAGGCTAATCGTGAGAAGATGACCCAGATCATGTTTGAGACCTTCAATACCCCTGCTATGTATGTAGCTATCCAGGCCGTTCTTTCACTGTATGCTAGTGGTCGTACCACCGGTATTGTGTTGGATTCTGGTGATGGTGTCAGCCACACTGTCCCTATTTACGAGGGTTATGCTCTACCACATGCCATCCTTCGTCTTGATCTGGCTGGTCGCGATCTCACTGATTTCCTGATGAAGATTTTGACTGAACGTGGTTACTCTTTTACCACCTCAGCAGAGCGTGAAATTGTTCGTGATGTGAAAGAAAAGTTGTCATACATTGCTCTTGACTATGAACAAGAGCTGGAGACAGCTAGGACCAGCTCTTCCGTCGAGAAGAGCTACGAATTGCCTGATGGACAGGTGATCACTATTGGAGATGAGCGTTTCAGGTGTCCAGAAGTCCTGTTCCAACCATCCATGATAGGTATGGAAGCAGCAGGAATTCACGAGACCACATACAACTCCATCATGAAGTGCGACGTTGATATCAGGAAAGACCTGTACGGTAACATTGTCCTTTCAGGAGGAACCACTATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAAATCTCTGCTTTAGCCCCAAGTAGCATGAAGATCAAGGTGGTCGCACCACCTGAGAGAAAATACAGTGTCTGGATTGGTGGTTCCATCTTGGCATCTCTTAGCACCTTCCAGCAGTGCAGATGTGGATTGCAAAGGCAGAATATGATGAATCTGGTCCATCTATTGTGCACAGAAAGTGCTTCTAGACAACTGTTTTGA 1152 0.467 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTERGYSFTTSAEREIVRDVKEKLSYIALDYEQELETARTSSSVEKSYELPDGQVITIGDERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQCRCGLQRQNMMNLVHLLCTESASRQLF* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2831 383 Gene3D Actin; Chain A, domain 4 182 273 - -
Tpr6g2831 383 SUPERFAMILY Actin-like ATPase domain 149 357 IPR043129 -
Tpr6g2831 383 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Tpr6g2831 383 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Tpr6g2831 383 PRINTS Actin signature 28 37 IPR004000 -
Tpr6g2831 383 PRINTS Actin signature 51 62 IPR004000 -
Tpr6g2831 383 PRINTS Actin signature 63 85 IPR004000 -
Tpr6g2831 383 PRINTS Actin signature 117 130 IPR004000 -
Tpr6g2831 383 PRINTS Actin signature 142 161 IPR004000 -
Tpr6g2831 383 PRINTS Actin signature 238 254 IPR004000 -
Tpr6g2831 383 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Tpr6g2831 383 PANTHER - 1 359 - -
Tpr6g2831 383 Pfam Actin 5 357 IPR004000 -
Tpr6g2831 383 PANTHER ACTIN 1 359 IPR004000 -
Tpr6g2831 383 Gene3D - 140 340 - -
Tpr6g2831 383 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Tpr6g2831 383 SMART actin_3 7 366 IPR004000 -
Tpr6g2831 383 Gene3D - 10 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2831 Tpr-Chr6 30755327 30759184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2831 1 356 Cytoskeleton Gene Families AT3G12110 97.472 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2831 K10355 - csv:101214247 716.072