Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2819 ATGACATCTTCTTCTAGCAACAATGAACAAAAAACCCAAAGCTCTTCAAACAACAATGAAGGGAAAAATGAGAACACAAGTGAAGAGAATTTACCCAAAAGCTCTTCTAACAACAATGAAGGGAAAAATGAGAACACAAGTGAAGAGAATTTACCCAAAATCTCTTCTAACAACAATGAAGTGAAAAATGAGAACACAATTGAAGAGAATTTACCCAAAATCTCTTCTAACAACAATGAAGGGAAAATTGAGAACTCAATGGAAGAGAAGAATGCAGATTCAAGGCTTTTTTCATGCAGCTTTTGCCACCACAAATTTTCAACTCAACAAGCGTTAGCAGGACATCAAAATGCTCATCGGGCAGAACGTGCATTAGAAAAGCAACGGAAAGAAAGGTATGATGGTGTAGGTTCTAGCTTAGGGCATCCATTTAACCCTAATTTTATTTATCCTACTAGTTTTTTCCCCCCTTGTACCTATAGGCCACTTGGGGTTCGAATGGAAGCATTCATTCGAAAACCACCTAGTGCTAGCCCTAATATTGGTCTTGGTGCTTTGGGTTTGACAGATATGTTAAACCCATCTCTTGTTAGCACAAAAAACAATATTGAGGGTTGTAGTAATGGGGTTGGAGTTCAAGGTATTGGTGGCGAAACTACTCCAAGGATTGGAGATGATGCTGGTCACAAATTTGTTGATTTTCTCAAGGTTGGGGATTCCTCTAATGTTGCTTCAACTTCAAATATTATGGACCTTAATTTGAACTCAAACAATGAAGAAGAATCCTCTAATTCTGAATCTGAATCTGAATCGGAGCTTGATTTAACACTCAAGCTTTAG 840 0.3774 MTSSSSNNEQKTQSSSNNNEGKNENTSEENLPKSSSNNNEGKNENTSEENLPKISSNNNEVKNENTIEENLPKISSNNNEGKIENSMEEKNADSRLFSCSFCHHKFSTQQALAGHQNAHRAERALEKQRKERYDGVGSSLGHPFNPNFIYPTSFFPPCTYRPLGVRMEAFIRKPPSASPNIGLGALGLTDMLNPSLVSTKNNIEGCSNGVGVQGIGGETTPRIGDDAGHKFVDFLKVGDSSNVASTSNIMDLNLNSNNEEESSNSESESESELDLTLKL* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2819 279 MobiDBLite consensus disorder prediction 250 279 - -
Tpr6g2819 279 PANTHER ZINC FINGER PROTEIN JAGGED 76 279 IPR045320 GO:0003700
Tpr6g2819 279 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Tpr6g2819 279 MobiDBLite consensus disorder prediction 1 79 - -
Tpr6g2819 279 SUPERFAMILY beta-beta-alpha zinc fingers 94 125 IPR036236 -
Tpr6g2819 279 Gene3D Classic Zinc Finger 74 139 - -
Tpr6g2819 279 PANTHER ZINC FINGER PROTEIN KNUCKLES 76 279 - -
Tpr6g2819 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2819 Tpr-Chr6 30634293 30635132 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2819 92 131 C2H2 Transcription Factor Family AT5G01860 62.500 5.94e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr6g2819 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2819 - - mtr:MTR_3g011970 162.155