Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2818 ATGGCGTCTGAATCATCTAATAGCTCTTCCACTTCACAACATCCAAATGAGAACAAACAAAATCAACTTCCAAACTCTGATTCAAACAAGTCAATTGACTTTGTGAATCTATCGAAAGATGATTTGGTTCAAAAAAATGAGAACAACGATGAAAAGAAAAATTCTGATTCAAAGTTGTATTCATGCAACTATTGCAAGGGTCGGTATTCTTCTTTGCAAGCATTAGGAGGCCACCAAAATGCGCATAAGGCAGAACGTGCATTACAAAAGCAACGGATGAAACAAAGGTATGAAGGTGATATTTTTAATTCAGGGCAACCCCGCTTTAATAACCCTTATTTAAACTATCCCATTACTCCTTATACACCTTTAAACTATAGGCCACTTGGTGTTAGAATTGAATCAATGATTCATAAATCACCTTATATTAGCCCTAGATTTGGTCATAGTGCTTTGCGTTTGCATGATATACTACACCCTTCTCTTGTTAGTGGGGTTGCAAATCTAGGTATTGGTGGTGCAACTACTTCAAGAAATGGTGCTATTCTGAAAATTGGAGAATCTTCTACAAATAATGTGGCTCCTAACAACGAAGAAGAACCATCTGACTCTGATTCTTCTGGACTGGATCTGTCACTTAAGCTTTAA 648 0.3688 MASESSNSSSTSQHPNENKQNQLPNSDSNKSIDFVNLSKDDLVQKNENNDEKKNSDSKLYSCNYCKGRYSSLQALGGHQNAHKAERALQKQRMKQRYEGDIFNSGQPRFNNPYLNYPITPYTPLNYRPLGVRIESMIHKSPYISPRFGHSALRLHDILHPSLVSGVANLGIGGATTSRNGAILKIGESSTNNVAPNNEEEPSDSDSSGLDLSLKL* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2818 215 MobiDBLite consensus disorder prediction 1 56 - -
Tpr6g2818 215 Pfam C2H2-type zinc finger 60 84 - -
Tpr6g2818 215 Gene3D Classic Zinc Finger 35 106 - -
Tpr6g2818 215 MobiDBLite consensus disorder prediction 1 35 - -
Tpr6g2818 215 MobiDBLite consensus disorder prediction 187 215 - -
Tpr6g2818 215 SUPERFAMILY beta-beta-alpha zinc fingers 56 88 IPR036236 -
Tpr6g2818 215 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Tpr6g2818 215 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Tpr6g2818 215 PANTHER ZINC FINGER PROTEIN KNUCKLES 43 215 - -
Tpr6g2818 215 PANTHER ZINC FINGER PROTEIN JAGGED 43 215 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2818 Tpr-Chr6 30618225 30618956 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2818 54 139 C2H2 Transcription Factor Family AT5G10970 42.045 1.26e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2818 - - mtr:MTR_3g011970 165.236