Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2816 ATGACGTCTGAATCATCTAATAGCTCTTCCACTTCTCAACATCCAGATGAGAACAAACAAAATCAACTTCCAGACTCTGATTCAAACAAGTCATCAATTGACTTTGTGAATCTATCGAAAGATGATTTGGATCGTGGGTCTAAAGTGCAAGAGCACAACTTTTTTAGCCCTGACCAAGTTGGTTCTTCATCTTCTGCAAAGTTTTATTCATGCTCTTACTGCAAGGGCCAATATTCTTCTTTACAAGCATTAGGTGGGCATCAAAATGCTCACAAAGCAGAACGTGCGTTACACATGCAACATATTAAACAAAGGTATGAAGGTGGTGCTTTTAATTTAGGGCAACCTCGTTTTAACCCTTATTTAAATTATCCTATTACTCCCTTTCCAACTTATAACTACTATAGGCCACTTGGAATTAGAATGGAGTCAATGATTCAAAAATCACCCTATTTTGGCCCTAGGGTTGGTTATGGTACTTTGAGTTTGCATGATATATTAAATCCTTCTCTTGTAAGCTTCAAAAATAATATGCTGGGTATTAATAGTGGGGTTGCAAGTCTAGGCATTGGTGGTGGTGCAACTACTTCAAGAACTGAAGATGAAGTTGGTTATACAAATAATGGAAATGGTGCAATTCTAAAAATTGGAGAATCTTCTGCAAATAATTTGGCTCCTATTGAAGAAGAATCATCTGATTCCGAATCTTCTGGGCTTGATCTGTCGCTTAAACTTTAA 738 0.3699 MTSESSNSSSTSQHPDENKQNQLPDSDSNKSSIDFVNLSKDDLDRGSKVQEHNFFSPDQVGSSSSAKFYSCSYCKGQYSSLQALGGHQNAHKAERALHMQHIKQRYEGGAFNLGQPRFNPYLNYPITPFPTYNYYRPLGIRMESMIQKSPYFGPRVGYGTLSLHDILNPSLVSFKNNMLGINSGVASLGIGGGATTSRTEDEVGYTNNGNGAILKIGESSANNLAPIEEESSDSESSGLDLSLKL* 246
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2816 245 Gene3D Classic Zinc Finger 44 110 - -
Tpr6g2816 245 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Tpr6g2816 245 MobiDBLite consensus disorder prediction 1 36 - -
Tpr6g2816 245 PANTHER ZINC FINGER PROTEIN JAGGED 24 245 IPR045320 GO:0003700
Tpr6g2816 245 MobiDBLite consensus disorder prediction 226 245 - -
Tpr6g2816 245 PANTHER ZINC FINGER PROTEIN KNUCKLES 24 245 - -
Tpr6g2816 245 Pfam C2H2-type zinc finger 69 93 - -
Tpr6g2816 245 MobiDBLite consensus disorder prediction 1 39 - -
Tpr6g2816 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tpr6g2816 Tpr-Chr6 30609702 30610467 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2816 62 161 C2H2 Transcription Factor Family AT5G25160 40.385 1.45e-12 63.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2816 - - mtr:MTR_7g022980 185.267