Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr6g2816 | ATGACGTCTGAATCATCTAATAGCTCTTCCACTTCTCAACATCCAGATGAGAACAAACAAAATCAACTTCCAGACTCTGATTCAAACAAGTCATCAATTGACTTTGTGAATCTATCGAAAGATGATTTGGATCGTGGGTCTAAAGTGCAAGAGCACAACTTTTTTAGCCCTGACCAAGTTGGTTCTTCATCTTCTGCAAAGTTTTATTCATGCTCTTACTGCAAGGGCCAATATTCTTCTTTACAAGCATTAGGTGGGCATCAAAATGCTCACAAAGCAGAACGTGCGTTACACATGCAACATATTAAACAAAGGTATGAAGGTGGTGCTTTTAATTTAGGGCAACCTCGTTTTAACCCTTATTTAAATTATCCTATTACTCCCTTTCCAACTTATAACTACTATAGGCCACTTGGAATTAGAATGGAGTCAATGATTCAAAAATCACCCTATTTTGGCCCTAGGGTTGGTTATGGTACTTTGAGTTTGCATGATATATTAAATCCTTCTCTTGTAAGCTTCAAAAATAATATGCTGGGTATTAATAGTGGGGTTGCAAGTCTAGGCATTGGTGGTGGTGCAACTACTTCAAGAACTGAAGATGAAGTTGGTTATACAAATAATGGAAATGGTGCAATTCTAAAAATTGGAGAATCTTCTGCAAATAATTTGGCTCCTATTGAAGAAGAATCATCTGATTCCGAATCTTCTGGGCTTGATCTGTCGCTTAAACTTTAA | 738 | 0.3699 | MTSESSNSSSTSQHPDENKQNQLPDSDSNKSSIDFVNLSKDDLDRGSKVQEHNFFSPDQVGSSSSAKFYSCSYCKGQYSSLQALGGHQNAHKAERALHMQHIKQRYEGGAFNLGQPRFNPYLNYPITPFPTYNYYRPLGIRMESMIQKSPYFGPRVGYGTLSLHDILNPSLVSFKNNMLGINSGVASLGIGGGATTSRTEDEVGYTNNGNGAILKIGESSANNLAPIEEESSDSESSGLDLSLKL* | 246 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr6g2816 | 245 | Gene3D | Classic Zinc Finger | 44 | 110 | - | - | |
Tpr6g2816 | 245 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 71 | 91 | IPR013087 | - | |
Tpr6g2816 | 245 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Tpr6g2816 | 245 | PANTHER | ZINC FINGER PROTEIN JAGGED | 24 | 245 | IPR045320 | GO:0003700 | |
Tpr6g2816 | 245 | MobiDBLite | consensus disorder prediction | 226 | 245 | - | - | |
Tpr6g2816 | 245 | PANTHER | ZINC FINGER PROTEIN KNUCKLES | 24 | 245 | - | - | |
Tpr6g2816 | 245 | Pfam | C2H2-type zinc finger | 69 | 93 | - | - | |
Tpr6g2816 | 245 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Tpr6g2816 | 245 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 69 | 96 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr6g2816 | Tpr-Chr6 | 30609702 | 30610467 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr6g2816 | 62 | 161 | C2H2 Transcription Factor Family | AT5G25160 | 40.385 | 1.45e-12 | 63.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr6g2816 | - | - | mtr:MTR_7g022980 | 185.267 |