Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2797 ATGGCGAACTCTTTCATTCCACTTTCTCTCTTTCACTCGCATTTTCCCTCTCTTCCTCATTGCACCTTCAAATTCTCCACCACTCGCTGCAATTACTCGTCTCTTGAAGTTAGAGATGTTAGTTATCAACCTCCAGGGACTCAGCTTAAGCTTCTCAATTCAGTTAATTTTTCACTTCCTGAGAAAAGTTTAGGTCTAATTTTCGGACAGAGTGGAAGTGGAAAAACAACTCTCTTGCAGCTCCTTGCAGGAATAAGCAAACCAACATCTGGATCTATTCACATTCAAAAATATGGGGATGATGGGAATCCTAGTCAATCTCCAGAGCCCTTGGTGCCGGAAAGGGTTGGTATTGTCTTCCAGTTTCCGGAGAGGTATTTTGTTGCTGATACTGTACTTGATGAAGTTACTTTTGGGTGGCCAAGGCAAAAGGGTAATGATCAATTAAGGGAGAATCTTGCTCTAGGGCTTCAGAGGGCAATTAACTGGGTTGGATTAGGTGGGATATCATTGGATACGAATCCTCAATCCCTCAGTGGTGGTTACAAGCGTCGCCTTGCTTTGGCAATACAATTGGTGCAAATCCCTGATTTATTAATATTGGATGAACCTCTTGCCGGACTTGATTGGAAAGCACGTGCGGATATTGTGAAGCTTTTAAAGCATCTAAAAAAAAAGTTAACTGTTCTAGTTGTCAGCCATGACTTGAGCGAGTTTGCAAGTCTAGTTGATCAATCATGGAGGATGGGAATGGGTGGCAATCTTAGACAGGAGCTTCTACCATTATAA 789 0.4233 MANSFIPLSLFHSHFPSLPHCTFKFSTTRCNYSSLEVRDVSYQPPGTQLKLLNSVNFSLPEKSLGLIFGQSGSGKTTLLQLLAGISKPTSGSIHIQKYGDDGNPSQSPEPLVPERVGIVFQFPERYFVADTVLDEVTFGWPRQKGNDQLRENLALGLQRAINWVGLGGISLDTNPQSLSGGYKRRLALAIQLVQIPDLLILDEPLAGLDWKARADIVKLLKHLKKKLTVLVVSHDLSEFASLVDQSWRMGMGGNLRQELLPL* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2797 262 CDD ABC_cobalt_CbiO_domain1 36 249 IPR015856 GO:0005524|GO:0016020|GO:0055085
Tpr6g2797 262 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 35 262 IPR003439 GO:0005524
Tpr6g2797 262 Pfam ABC transporter 52 205 IPR003439 GO:0005524
Tpr6g2797 262 PANTHER HEAVY METAL TRANSPORTER 28 258 - -
Tpr6g2797 262 Gene3D - 22 259 IPR027417 -
Tpr6g2797 262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 252 IPR027417 -
Tpr6g2797 262 SMART AAA_5 61 253 IPR003593 -
Tpr6g2797 262 PANTHER ABC TRANSPORTER I FAMILY MEMBER 11, CHLOROPLASTIC 28 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2797 Tpr-Chr6 30433959 30450519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2797 35 237 Calmodulin-binding Proteins AT2G36910 26.316 3.29e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2797 - - vun:114196181 403.29