Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2795 ATGGATTGGGATTGGAAAGAGTTTGCTTGGGATCCATCTGGGTTAGAAGAGTTGAAAAATGAAGGAGATTCTGTTGATTTGAGGCTTGGTGAAGCTTCTGATTCAATGGAAAAATCTGTTCAAGAAACAGGAATGGAAGATTCGAAAGCTGTGTCGTCTTTTTCGGGATCATTGAAACGGTCGCGTTCGCAAAATGGATCGCAGAATATGATTTGCTCGGTTGATGGATGTGATGCTGATCTTAGTGATTGTAGAGAGTATCATAAGCGTCATAGGGTATGCGAAAAGCATTCGAAGACACCAGTTGTTTTGGTTGGAGGTAAGCAGCAGAGGTTCTGCCAACAATGCAGCAGGTTTCATTCACTTGCGGAGTTTGATGATGTTAAGAGGAGTTGCAGGAAGCGTCTTGATGGACATAATAAGCGAAGGAGGAAACCTCAGCCACCTTCTCTTTTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGGACCTAGAATCCTGCACTTTGGTAGCCCTCAGGCATATGTGAATGTGAATCCTATTGTTAGAAATATTTGGCCTGCCACTTCCATAACTGAAGCTGAATCCGGTTACGATCATCACCGATTTTTGTATCGAATCGACAAACATAAACAGGATAAAGGACATCCTCATTGGCAAGAAATTCTCCCTAAATCCGGCGATGTTAACAAAGCTGTGCCCGGAATTCCTATCAACCAACCTATTCGGAGTGCTGTTGATTCATCAGCAGGTGGAAAAGGCGGTAGGAAACTCTCTTCTGATAGCAAGCCCGGATCTTTTGACTCGGGTTGTGCTCTCTATCTTCTGTCAACACTTCAAACACAAAGTTCAGAGTTGAGTTTGATGCAGTCAAGCATCAACAACAGTCCAACAGAATCTTCGTCTGGAACGGTGCATTTCGATGCGATGAATGAGTACTCATGCTCGGGAAAGGCGAAAGATAAGCCTAATAATGGTTCAGTTTTTGTTCTAGATGGAAACACAACAAACCTTCATTGCAATGGGATGCTGCAAATGGGGCCTAGTAGTTTGGTTGAAAATGAAAACTCGCTGACACTTCCATTTTTCTGGGAGTAA 1101 0.4296 MDWDWKEFAWDPSGLEELKNEGDSVDLRLGEASDSMEKSVQETGMEDSKAVSSFSGSLKRSRSQNGSQNMICSVDGCDADLSDCREYHKRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLAEFDDVKRSCRKRLDGHNKRRRKPQPPSLFMAAEKFMYNYKGPRILHFGSPQAYVNVNPIVRNIWPATSITEAESGYDHHRFLYRIDKHKQDKGHPHWQEILPKSGDVNKAVPGIPINQPIRSAVDSSAGGKGGRKLSSDSKPGSFDSGCALYLLSTLQTQSSELSLMQSSINNSPTESSSGTVHFDAMNEYSCSGKAKDKPNNGSVFVLDGNTTNLHCNGMLQMGPSSLVENENSLTLPFFWE* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2795 366 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 9 366 IPR044817 GO:0003677
Tpr6g2795 366 Gene3D - 62 133 IPR036893 GO:0003677|GO:0005634
Tpr6g2795 366 MobiDBLite consensus disorder prediction 31 62 - -
Tpr6g2795 366 SUPERFAMILY SBT domain 70 151 IPR036893 GO:0003677|GO:0005634
Tpr6g2795 366 MobiDBLite consensus disorder prediction 45 62 - -
Tpr6g2795 366 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 9 366 - -
Tpr6g2795 366 Pfam SBP domain 72 145 IPR004333 GO:0003677
Tpr6g2795 366 ProSiteProfiles Zinc finger SBP-type profile. 69 146 IPR004333 GO:0003677
Tpr6g2795 366 MobiDBLite consensus disorder prediction 242 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2795 Tpr-Chr6 30398861 30403041 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2795 68 195 SBP-box Gene Family AT5G50670 53.906 1.39e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tpr6g2795 SBP 3.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2795 - - lja:Lj1g3v3847150.1 526.168