Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2791 ATGAAAGAGTGTTTCCCAGCTATGATAAAGGTTACAAATTTGGAGTCTCGCTCGCTCAGCAATTGCTCCTCTGTCCTCTGCCTCCTCGTATTGTTAGAAGGAATGAAGTCATTTACGGATTTGGGTTTATCTTTTCAATTGGTGGAAGCTTGTGAAAAACAACTGGTTTGGTATAATCCAATGAAGATTCAGACAGAAGTGATTCCCCTTGCGCTACAAGGAAAAGATGTGTTTGCAATTTCGCCACCGCGTTCCGGTAAGGTTGGGGCTTTTGTTCTTCCTATATTGCATGCCCTCTTAGAAACCGGACCGAACCTAAACACTTTCTTTGCTTGTGTGCTATCTCCTACAAGGCCACTTGTTGCTCAAATTGCTAAATACTTTAGGGATCTGGGATCTCAATTTGGTGTCAAGGGTGCTGTGCTTGTTGAAACGCCCGACATGGAATATCAATCTAACCAGATTTCTCAGCAACCTCATATTATTGTTGGGACCCCTGAACAAGTCTTAAACAACCTAAGACACACCCAAGGATTTTCTCTTGCTCTTGGTAGATTAAAATACCTGGTTATAGATGATGCACACTTGCTGTTGAATAATCCCTCCGAGCAACAACTATATGATATTTTAGAAATGATTCCTAGTGAGCGGAGAACATTTCTTTTTTCATCTACATCGACAGAGAAGGTGCATCCAATCCAAAGTGTGTGTTTAAGGAATCCTGTAAAGATTGACTTATCTTCAACATATTCTATCTTGGACACACTGCAACAGAAACGCTGCTCATTGCTAGGAAATCATAAGGATTGCTACCTTGCATACACTCTCGCTGAAATGACTGGATTCACTGAAAGAAAATCAATTGTATTCACCGAGACATGTGGTTCCACGCTTATTCTGGCTTTGATTCTTAAGAATCTTGGTTTCAGACCCATCCCGATTATTATTTATATGAGTCAGGCAAAGAAACTTGAATCCTTGAATGCGTTCAAGTCCGGGGAGTCCAATATTCTCCTTTGTAGTGACGTAGTTAGTAAGGGACTAGATATTCCAGCGATATATATGGTGATTAACTACGGCCTTCCTAGGGATCCAAACGATTATATGTACCGCGTGGGGACTGCTCATGCTGATGTTGCCATTTCCTTTGTGAGCAAATATGAAGGGGGACAGTTCAATATGATAGAGAGACTTATAGGCAATCAGCTACCAATGTATCCTGCACCAAATGAGGATGTTTTGCTTTTGGAAAGGCGTGTTAGTGAGGCCAAAGAATTTGCACAAAAGGAAACGAAAGAATTCGGTTGGAAGAGCGGAGGATACTTAACACAGGAGGATGTCAATAAGATACAAGGTTTCGGTCAAAGATTCAAGTGGGAATACTACAGACCAATTTGGAACAATTTTAATTAG 1413 0.4098 MKECFPAMIKVTNLESRSLSNCSSVLCLLVLLEGMKSFTDLGLSFQLVEACEKQLVWYNPMKIQTEVIPLALQGKDVFAISPPRSGKVGAFVLPILHALLETGPNLNTFFACVLSPTRPLVAQIAKYFRDLGSQFGVKGAVLVETPDMEYQSNQISQQPHIIVGTPEQVLNNLRHTQGFSLALGRLKYLVIDDAHLLLNNPSEQQLYDILEMIPSERRTFLFSSTSTEKVHPIQSVCLRNPVKIDLSSTYSILDTLQQKRCSLLGNHKDCYLAYTLAEMTGFTERKSIVFTETCGSTLILALILKNLGFRPIPIIIYMSQAKKLESLNAFKSGESNILLCSDVVSKGLDIPAIYMVINYGLPRDPNDYMYRVGTAHADVAISFVSKYEGGQFNMIERLIGNQLPMYPAPNEDVLLLERRVSEAKEFAQKETKEFGWKSGGYLTQEDVNKIQGFGQRFKWEYYRPIWNNFN* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2791 470 CDD SF2_C_DEAD 256 384 - -
Tpr6g2791 470 Pfam Helicase conserved C-terminal domain 284 373 IPR001650 -
Tpr6g2791 470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 400 IPR027417 -
Tpr6g2791 470 PANTHER BNAC02G41920D PROTEIN 33 440 - -
Tpr6g2791 470 SMART ultradead3 56 259 IPR014001 -
Tpr6g2791 470 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 275 414 IPR001650 -
Tpr6g2791 470 SMART helicmild6 298 373 IPR001650 -
Tpr6g2791 470 Gene3D - 30 246 IPR027417 -
Tpr6g2791 470 Pfam DEAD/DEAH box helicase 62 230 IPR011545 GO:0003676|GO:0005524
Tpr6g2791 470 Gene3D - 251 418 IPR027417 -
Tpr6g2791 470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 245 IPR027417 -
Tpr6g2791 470 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 244 IPR014001 -
Tpr6g2791 470 PANTHER RNA HELICASE 33 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2791 Tpr-Chr6 30351138 30356614 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2791 57 414 Eukaryotic Initiation Factors Gene Family AT1G72730 26.243 7.74e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2791 K14777 - gmx:100775796 442.965