Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2790 ATGTGCAACACTGATCATGACCCTAACAAGGGGAAAGAGAAAGTGAATGAAGAACCAATAGTCACTTTCAAGACTATAGGGATTCAGAACAATGAGAACAAGCGAAAGGCGATCGTTCTAGTTGAATCTGAAACAAACAATTTAAAAAGTCCTACAAATGCTGATGCTGGTGAAGAATCATCTAATTCATCAAAAGAAATTTCCCCATTTCTTCTTTTTGGATTCATTATTGATCCTAATAAGAGAATTAGACATGGTTACTCATGCAATTTTTGTAGCCGAAAATTCATTAATCCACAAGCATTAGGTGGTCATCAAAATTGCCACAAATTGGAGAGAAGACTCAAAAAAAGGGCTGAAGATATTAACAAAAATTGGATAAATTACTTAAATGGTACTCAACGGATGGTAAGTCAGAACACCATCATTCCATACCATGGCGGGTATGGATATCCATATAATGGTTATGACAATATGATTCAGCTTTCAGCATCATCAAATTTTCATGCAGGAAATTTGCTTGAAGTTATCAATGAGGCTGACCAAGGCATTATGAACCCACAAATTACTATGCCTGGAGGTGCTGATGGTGATAATCAAGAAGACAAAGATAATCAAGAGGAGGAAGAATCGAAGATTGATTTGACCCTTAAGCTTTGA 660 0.3606 MCNTDHDPNKGKEKVNEEPIVTFKTIGIQNNENKRKAIVLVESETNNLKSPTNADAGEESSNSSKEISPFLLFGFIIDPNKRIRHGYSCNFCSRKFINPQALGGHQNCHKLERRLKKRAEDINKNWINYLNGTQRMVSQNTIIPYHGGYGYPYNGYDNMIQLSASSNFHAGNLLEVINEADQGIMNPQITMPGGADGDNQEDKDNQEEEESKIDLTLKL* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2790 219 SUPERFAMILY beta-beta-alpha zinc fingers 86 115 IPR036236 -
Tpr6g2790 219 MobiDBLite consensus disorder prediction 194 219 - -
Tpr6g2790 219 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Tpr6g2790 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Tpr6g2790 219 PANTHER EXPRESSED PROTEIN 11 174 - -
Tpr6g2790 219 PANTHER ZINC FINGER PROTEIN JAGGED 11 174 IPR045320 GO:0003700
Tpr6g2790 219 Gene3D Classic Zinc Finger 75 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2790 Tpr-Chr6 30345978 30346637 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2790 87 219 C2H2 Transcription Factor Family AT5G57520 30.075 5.62e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2790 - - mtr:MTR_7g022250 214.542