Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2788 ATGTGCAACACTAATAAACGTGATGCAAACAAGGGAAAGGAGAAAGTGAATGAAGAACCAATAGTCAATTTCAAGACTATGGAGATTCAAAACAATGACAACAAGAGAAAGGCGATCGTTCTAGTAGAATCTGATGTCGATGGTGGTGAAAAAGAATCGACAAAATCATCCAAAGAAATGTCTCCATTTCTTCTTTTTGGATTCATTATTGATCCTAATAATGGAATTAAACATGCATATTCGTGCAATTTTTGTAGCCGAAAGTTCATTAGTCCACAAGCATTAGGTGGCCATCAAAATTGTCATAGACAGGAGAAAAGACTCAAAAAAATGATTGAAGATATGAACAATGATTGGATAAATTACTTAAATGGTAATCAAGGACTGATAAGTCAAAACACCATCATTCCATACCATGGGGGGTATGGATATCAATATAATGAAATTATCAATGAGGTTGACCAAGGCATTGTTAGTCAACAAATTACTATGACTGAGATTTACTATGGTTCAACTTCAAATATGGGTGCTGATTGTGATGATGCTGAACATGAAGACAAAGAGACCGAGAAGGAGGAAGAATTCAAGATTGATTTGACCCTTAAACTTTGA 612 0.348 MCNTNKRDANKGKEKVNEEPIVNFKTMEIQNNDNKRKAIVLVESDVDGGEKESTKSSKEMSPFLLFGFIIDPNNGIKHAYSCNFCSRKFISPQALGGHQNCHRQEKRLKKMIEDMNNDWINYLNGNQGLISQNTIIPYHGGYGYQYNEIINEVDQGIVSQQITMTEIYYGSTSNMGADCDDAEHEDKETEKEEEFKIDLTLKL* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2788 203 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Tpr6g2788 203 PANTHER ZINC FINGER PROTEIN JAGGED 10 113 IPR045320 GO:0003700
Tpr6g2788 203 Gene3D Classic Zinc Finger 70 124 - -
Tpr6g2788 203 PANTHER EXPRESSED PROTEIN 10 113 - -
Tpr6g2788 203 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Tpr6g2788 203 SUPERFAMILY beta-beta-alpha zinc fingers 78 108 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2788 Tpr-Chr6 30338291 30338902 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2788 69 203 C2H2 Transcription Factor Family AT1G80730 27.907 1.44e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2788 - - mtr:MTR_7g022250 195.282