Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2758 ATGAAGTTGACAAAATATTTAGTTTCTAAATTTGTTGATCCAAAAATGTGGATGCTTATTGTTCTTATCTTTGGTTTGATAGTGGGGACTCAATCATCCACAATGACACCCTCACTTCAAACAGAAGCAAGTGCTATATTGAATAGTGGATGGTGGCACACATCTAATGAACGTTTCAGCATCTCTATTTATTGTAATTGGTCTGATATAAGTTGCAACAAGGATGGAAGCATAAAAGCAATCCATATAGATCCTCAGTTTACAGAAACGGTGTCGGGCTATCCACAATTTGCAACTCTCAACTTGTCTTCTTTCCATAATTTAGAAAGCCTTGTTATCAAGTCAATGGGGATACAAGGGACTATCCCAAAAGAAATTGGTCTTCTCTCCAACCTCACTTACCTTGATTTGTCTCATAATTCTCTTTCAGGTGAGATACCTCTTTCACTAAAAAATCTCACAAAACTCACTTATCTTGATCTTGGTCATAATTATTTTTTCAGTGAAATACCTCTTTCACTAGGAAACCTTGGAAGATTAGAACACCTAGACATCTCTTCCAACGACTTTTATGGTTTCATTCCTCATGAGTTGGGATTCCTTAAACTTCTTATTGTATTAAATCTATCAAACAATTATGGAATTGAAGGTGAGATTCCTCCTTCAATAGGAAATCTCACCAAACTCACTCATCTTAATATGTCTGCCAATTCTCTTGTAGGTAAGATACCTCATTCACTAGGAAATCTTAGACAATTAGAGTACCTAGACATCTCTGGTAACAATATTAATGGTTCCATTCCTCCCGAGTTGTGGTTCCTAAAAAATCTCAGTGTATTAAGCCTATCTAACAATAACTTAAAAGATGAGATACCTCATTCAATAGAAAATCTCAAACAATTAGAGTACCTTGACATCTCTAATAACTACATTGATGGTGAGATACCTCCTTCACTAGGAAACCTTAGACAATTAGAGTACCTAGACATCTCTTTTAACAATATTCATGGTTCCATCCCTCGCGAGTTGGGGTTCCTGCAAAATCTCACTAAACTAAGTCTATCTAACAATAGATTCAAAGGTGGGATACCTTCTTCAATAAGAAATCTCAGCCTATTAGAGGAGCTAGACATTTCTCACAACAACATTCAAAGATTCATTCCTCTCGAGTTAGGGTTCCTTAAAAATCTGATTATATTAGATCTATCTTACAATAGCTTCAAAGGTGAGATACCTTCTTCAATAGGAAATCTCAGCCTATTAGAGGTGCTATGCATTTCTAACAACAACATTCAAGGATTCATTCCTCTTGAGTTGGGGTTCTTGAAAAATCTCACTAGATTAGATCTATCTAACAATAGACTCAAAGGTGGGATTCCTTCTTCACTAGGAAATCTCAACCAATTAGAAGAGCTAAACATTTCTAACAGCAACATTCAAGAATTCATTCCTCTTGAGTTGGGGCTCCTGAAAAATCTCACTAGATTAGATCTATCTAAAAATAGACTCAAAGGTATGATACCTTCTTCACTAGGAAATCTCAACCAATTAGAAGAGCTAAACATTTCTAACAATAACATTCAAGGATTCATTCCTCTTGAGTTGGGGTTCCTTAAAAGTCTGATTATATTAGATCTATCTTACAATAGACTAAATAGAAACTTGCCCATTTCCCTTTCAAATCTCACACAATTAGATTACATTGACATCTCTAACAATTACCTCACTGGTTCCCTTCCATCTAACTTTGACCAATTAAATAAATTGCGAGTTTTGTGGTTAAGCAATAATATTCTCACAGGAACGGTTCCCCAATCTCTCTGTCATGTCACTTATGTGGACATTTCCTACAATTATTTGAAGGGTCCTATTCCAAATTGTAATGATTCTCACAGGATAATAGGGAACAAGGATCTATGTACTGCCAGTGCCATTTTATATGAACAAATCAACTTCAAATTCCAACCTTGCAAGAAAAGTAAAAAAGCAAATCACAATGTCGTCGTTGTTGTTGTTACTATCCTTATGATTTTTATATTAGGATTCTCACTTCTCATATGCTTGAAACTTCGTCATAATTCTATTAAGAGCAAGCATGCAAACACAACCACCACAACAAAAAATGGGGATTTGTTTTGCGTATGGAATTATGATGGAAAAATAGCATATGATGACATTATCAAAGCAACAGAAGACTTTGACATGAGATATTGCATTGGAAGAGGAGCATATGGAAGTGTTTACAAGGCACAATTACCATGCGGAAAAATTGTTGCCCTAAAAAAACTTAACAACTACGAAGCCGAGGTTCCTTCTTTCGATGAAAGTTTTAGAAATGAAGTGAGAATACTATCAGAAATAAAGCACAAGAATATTGTGAGGCTTCATGGATTCTGCTTGCACAAAAGAATAATGTTTTTGATTTATCAGTATATGGAGAAAGGAAGCTTGTTTTCTGTCTTGTATGATGATGTAGAAGCCATGGAATTCAATTGGAGAAAAAGGCTTAACATTGTTAAAGGAGTTGCATTTGCTCTATCTTATCTTCATCATGATTGCAACCCTTCGATAGTGCATAGAGATGTATCGAGTAACAATATCTTGTTAAACTCTGAGTGGCAGCCTACTGTTTCTGACTTTGGCACAGCTCGACTCCTTCAACATGATTCATCCAATCGAACAATAGTTGCTGGAACAATTGGATATATAGCTCCTGAGCTTGCTTATACCATGGTTGTGAGTGAAAAGTGTGATATATACAGTTTTGGAGTGGTGGCACTAGAATGTTTAATGGGAAGACACCCTGGAGAAATATTGCAATCACTTCAATTAGCATCAACCGAAAGTATGAAATTATGTGAAGTATTAGACCAACGTCTCCCATTTCCAAATAATGCGATGGTTTTACTTGACATAATTCGTGTAGCCGTAATAGCATTTGCATGCTTAAATTTCAATCCTAGCTCTCGTCCAACAATGAAATGTGTGTCACAGAGTTTTCTCTCTGAGCTTACACCATCAACCATTCCTTTAAGTGAAATTTCAATGCAGCAACTTATGAGTCAAGAACTCAAAACATTATTTCATATTATCCCATGA 3099 0.3562 MKLTKYLVSKFVDPKMWMLIVLIFGLIVGTQSSTMTPSLQTEASAILNSGWWHTSNERFSISIYCNWSDISCNKDGSIKAIHIDPQFTETVSGYPQFATLNLSSFHNLESLVIKSMGIQGTIPKEIGLLSNLTYLDLSHNSLSGEIPLSLKNLTKLTYLDLGHNYFFSEIPLSLGNLGRLEHLDISSNDFYGFIPHELGFLKLLIVLNLSNNYGIEGEIPPSIGNLTKLTHLNMSANSLVGKIPHSLGNLRQLEYLDISGNNINGSIPPELWFLKNLSVLSLSNNNLKDEIPHSIENLKQLEYLDISNNYIDGEIPPSLGNLRQLEYLDISFNNIHGSIPRELGFLQNLTKLSLSNNRFKGGIPSSIRNLSLLEELDISHNNIQRFIPLELGFLKNLIILDLSYNSFKGEIPSSIGNLSLLEVLCISNNNIQGFIPLELGFLKNLTRLDLSNNRLKGGIPSSLGNLNQLEELNISNSNIQEFIPLELGLLKNLTRLDLSKNRLKGMIPSSLGNLNQLEELNISNNNIQGFIPLELGFLKSLIILDLSYNRLNRNLPISLSNLTQLDYIDISNNYLTGSLPSNFDQLNKLRVLWLSNNILTGTVPQSLCHVTYVDISYNYLKGPIPNCNDSHRIIGNKDLCTASAILYEQINFKFQPCKKSKKANHNVVVVVVTILMIFILGFSLLICLKLRHNSIKSKHANTTTTTKNGDLFCVWNYDGKIAYDDIIKATEDFDMRYCIGRGAYGSVYKAQLPCGKIVALKKLNNYEAEVPSFDESFRNEVRILSEIKHKNIVRLHGFCLHKRIMFLIYQYMEKGSLFSVLYDDVEAMEFNWRKRLNIVKGVAFALSYLHHDCNPSIVHRDVSSNNILLNSEWQPTVSDFGTARLLQHDSSNRTIVAGTIGYIAPELAYTMVVSEKCDIYSFGVVALECLMGRHPGEILQSLQLASTESMKLCEVLDQRLPFPNNAMVLLDIIRVAVIAFACLNFNPSSRPTMKCVSQSFLSELTPSTIPLSEISMQQLMSQELKTLFHIIP* 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2758 1032 Pfam Leucine Rich Repeat 179 201 IPR001611 GO:0005515
Tpr6g2758 1032 Pfam Leucine Rich Repeat 444 466 IPR001611 GO:0005515
Tpr6g2758 1032 Pfam Leucine Rich Repeat 588 609 IPR001611 GO:0005515
Tpr6g2758 1032 ProSiteProfiles Protein kinase domain profile. 733 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2758 1032 SUPERFAMILY Protein kinase-like (PK-like) 717 998 IPR011009 -
Tpr6g2758 1032 PRINTS Leucine-rich repeat signature 132 145 - -
Tpr6g2758 1032 PRINTS Leucine-rich repeat signature 442 455 - -
Tpr6g2758 1032 SMART LRR_typ_2 514 537 IPR003591 -
Tpr6g2758 1032 SMART LRR_typ_2 370 392 IPR003591 -
Tpr6g2758 1032 SMART LRR_typ_2 538 562 IPR003591 -
Tpr6g2758 1032 SMART LRR_typ_2 153 177 IPR003591 -
Tpr6g2758 1032 SMART LRR_typ_2 298 322 IPR003591 -
Tpr6g2758 1032 SMART LRR_typ_2 129 152 IPR003591 -
Tpr6g2758 1032 SMART LRR_typ_2 586 609 IPR003591 -
Tpr6g2758 1032 SMART LRR_typ_2 394 418 IPR003591 -
Tpr6g2758 1032 SMART LRR_typ_2 226 250 IPR003591 -
Tpr6g2758 1032 SMART LRR_typ_2 346 369 IPR003591 -
Tpr6g2758 1032 SMART LRR_typ_2 490 513 IPR003591 -
Tpr6g2758 1032 SMART LRR_typ_2 274 297 IPR003591 -
Tpr6g2758 1032 SMART LRR_typ_2 442 466 IPR003591 -
Tpr6g2758 1032 ProSitePatterns Protein kinases ATP-binding region signature. 739 761 IPR017441 GO:0005524
Tpr6g2758 1032 Gene3D Phosphorylase Kinase; domain 1 692 811 - -
Tpr6g2758 1032 Pfam Leucine rich repeat 348 406 IPR001611 GO:0005515
Tpr6g2758 1032 Pfam Leucine rich repeat 492 551 IPR001611 GO:0005515
Tpr6g2758 1032 Pfam Leucine rich repeat 107 165 IPR001611 GO:0005515
Tpr6g2758 1032 Pfam Leucine rich repeat 276 335 IPR001611 GO:0005515
Tpr6g2758 1032 Pfam Leucine rich repeat 206 263 IPR001611 GO:0005515
Tpr6g2758 1032 ProSiteProfiles Leucine-rich repeat profile. 276 299 IPR001611 GO:0005515
Tpr6g2758 1032 Gene3D Ribonuclease Inhibitor 370 648 IPR032675 -
Tpr6g2758 1032 Gene3D Ribonuclease Inhibitor 211 369 IPR032675 -
Tpr6g2758 1032 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 35 277 - -
Tpr6g2758 1032 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 265 414 - -
Tpr6g2758 1032 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 410 507 - -
Tpr6g2758 1032 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 363 463 - -
Tpr6g2758 1032 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 458 567 - -
Tpr6g2758 1032 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 565 1026 - -
Tpr6g2758 1032 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 224 303 - -
Tpr6g2758 1032 ProSitePatterns Tyrosine protein kinases specific active-site signature. 857 869 IPR008266 GO:0004672|GO:0006468
Tpr6g2758 1032 SUPERFAMILY L domain-like 315 629 - -
Tpr6g2758 1032 Gene3D Ribonuclease Inhibitor 38 210 IPR032675 -
Tpr6g2758 1032 ProSiteProfiles Leucine-rich repeat profile. 131 154 IPR001611 GO:0005515
Tpr6g2758 1032 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 35 277 - -
Tpr6g2758 1032 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 458 567 - -
Tpr6g2758 1032 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 565 1026 - -
Tpr6g2758 1032 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 363 463 - -
Tpr6g2758 1032 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 265 414 - -
Tpr6g2758 1032 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 410 507 - -
Tpr6g2758 1032 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 224 303 - -
Tpr6g2758 1032 Gene3D Transferase(Phosphotransferase) domain 1 812 1008 - -
Tpr6g2758 1032 SUPERFAMILY RNI-like 102 408 - -
Tpr6g2758 1032 Pfam Protein kinase domain 739 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2758 1032 SMART LRR_sd22_2 226 252 - -
Tpr6g2758 1032 SMART LRR_sd22_2 586 609 - -
Tpr6g2758 1032 SMART LRR_sd22_2 274 300 - -
Tpr6g2758 1032 SMART LRR_sd22_2 346 372 - -
Tpr6g2758 1032 SMART LRR_sd22_2 538 564 - -
Tpr6g2758 1032 SMART LRR_sd22_2 418 439 - -
Tpr6g2758 1032 SMART LRR_sd22_2 129 155 - -
Tpr6g2758 1032 SMART LRR_sd22_2 442 468 - -
Tpr6g2758 1032 SMART LRR_sd22_2 322 343 - -
Tpr6g2758 1032 SMART LRR_sd22_2 490 516 - -
Tpr6g2758 1032 SMART LRR_sd22_2 373 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2758 Tpr-Chr6 30095379 30099297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2758 58 905 Receptor kinase-like Gene Family AT4G08850 38.150 1.18e-175 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr6g2758 Pkinase 3.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2758 - - mtr:MTR_8g047230 1123.23