Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2739 ATGACATATTTTTATCTCAATCTTATTGTTCTTTCTTTGTTTTTCTTCATCCATAGTACTCATGAGTTACAATTTGCTCAAACACAAGTTCTGTTACAGTTAAGAAAGTATCTTGAATACCCTACCTCTCTGCAAATTTTTGAAAATTACAATTTAAACCTTTGTACCATTCCTCAATCTGAACATTTCAGCATTAAATGTGAGGGTAATTCAGTAACTGAGCTCAAAATCATAGGAGACAGTCATAAACATGCAAAGATTTCCAAATTCAATGGTTTTGCAGTTCCAAATCAAACACTATCCAAAACTTTCTCTATTGATTCTTTTGTCACAACATTAGCAAGGTTAACAAATTTAAAGGTACTTAGTTTGGTTTCTTTAGGTATATGGGGCCCACTTCCTGATAAGATTCATAGATTATCTTTGCTTCAAGTTTTGGATTTAAGTTCAAATTTCTTATTTGGTTCTATTCCACCAAAGATAGGTGCATTGGTTAATCTTCAAATATTAACATTTGATGGAAATTATTTTAATGCAACAATGCCTAATGTTTTTGAACCTTTGTTTAATTTAACTAGCTTGAGTTTGAAAAATAATCACTTAAAGGGTTCATTTCCTTTTTCATTATGCAAAAGTAAATCTCTTACTGATATTTCATTTTCACATAATGAATTATCTGGTGCATTGCCGAATTTTGTTGAGCTTTCGAGGTTACGTGTGTTGGATTTAAGAGAAAATAGTTTTGATTCTGAGTTACCTTTGATGCCGAAATCATTAGTCACGGTGTTGCTAAGTAAAAACTCGTTCACCGGTGTGATTCCTAGTGAGTTTGGTGAATTGAATCAGCTTCAACATCTTGATCTTTCGTGGAATCGTCTTAGCGGGGTGTGTCCGTCGTCGTTGTTTTCTTTGACAAATATTAGTTACTTGAATTTAGCAAATAATGATCTAAGTGGTTCAATTCCAAAGAAACTAAAATGTGGAACCAAACTTGGATTTGTGGATATTTCTAGTAACATGTTAAGTGGTTTTGTTCCTTCTTGTTTGGAAAGTACTTCTGATAGAAGAGTTGTTAGATTTGGTGGAAATTGCTTATCTGTTAACTCTCAACCTCAGAATCAGAAGAATAGTTCTTATTGTAAAGAATCTAGTTCAAGAAAGATGAAATTTTGGAGATGGGAACTTGATGTTGCAATTGCTATCATTGTTGTGGTTTTGCTTTTGCTTTTAGCTTTTGGAGTTTTCTTTTACAGAAAGTTTCATTCAAGAGAGATATATAGACATGAAATGTTGCCAAAGATTGTTCAAGATAATTCAACAACAGGAGTTTCCTCTGAACTTCTTGCTAGTGCAAGATATATTTCTCAAACAATGAAGCTAGGGACACAAGCTACTCCAAGTAGTAGACACTTTTCCATTGAAGAATTGAAGGAAATCACAAGAAACTTTGATTTGTCAACTTATATTGGTGAAGGATCCATAGGAAAGCTGTACAAAGGTAAACTAGAGAATGGATCTTATGTGATTATAAGATCATTGGCTCTGAGAAAGAAATTCTCAATACAAAATCTCAAAGCTAGGTTGGATTTACTGTCAAAGCTTCACCATCCAAATTTGGTTAGTCTCTTAGGTCATTGTATTGATGGTAGTGGAAAAGATGGTGCTAGTACCAACAAGCTTCATCTTGTGTACGAGTATGTGCAAAATGGCGATTATCGTACACATTTGTCAGAATTTTCGTCAGATAAGGCACTAAAATGGTCTGATAGATTGGCAATTTTAATTGGAGTTGCAAAGGCTGTGCATTTTTTGCATACTGGAATTATACCAGGTTGTTTTAGAAACCAATTAAAGACGAACAATGTTTTACTTCATGAACACCGCTTTCCCAAACTAAGCGACTATGGTATGTCCTTGATCTCCGAAGAGATCGAAAACATTGAGGTAAAGGGAGTGATTCCAAAATCTTGCCAAAGGGAAGAATTAAAGGATGATGTTTACAATTTTGGTTTCATATTGTTTGAATCACTTGCTGGTCCCATAGCAAGTGAGAAAGGAGAAGCATTCTTTCTTAATGAAAAGGCATCATTTGATAGTCATGATGGTAGAAAAAGAATAGTAGATCCAATAGTGTTGACAAGTTGCTGTCAAGAGTCTTTATCAATTGTAATATCTATCACAACCAAATGCATATCTCCACAATCATCGTCTCGTCCTTCTTTTGAAGATGTCCTCTGGAATTTACAATATGCAGCTCAAGTTCAAGCCACGGCAGATGCAGATTCTATATCCTAG 2295 0.342 MTYFYLNLIVLSLFFFIHSTHELQFAQTQVLLQLRKYLEYPTSLQIFENYNLNLCTIPQSEHFSIKCEGNSVTELKIIGDSHKHAKISKFNGFAVPNQTLSKTFSIDSFVTTLARLTNLKVLSLVSLGIWGPLPDKIHRLSLLQVLDLSSNFLFGSIPPKIGALVNLQILTFDGNYFNATMPNVFEPLFNLTSLSLKNNHLKGSFPFSLCKSKSLTDISFSHNELSGALPNFVELSRLRVLDLRENSFDSELPLMPKSLVTVLLSKNSFTGVIPSEFGELNQLQHLDLSWNRLSGVCPSSLFSLTNISYLNLANNDLSGSIPKKLKCGTKLGFVDISSNMLSGFVPSCLESTSDRRVVRFGGNCLSVNSQPQNQKNSSYCKESSSRKMKFWRWELDVAIAIIVVVLLLLLAFGVFFYRKFHSREIYRHEMLPKIVQDNSTTGVSSELLASARYISQTMKLGTQATPSSRHFSIEELKEITRNFDLSTYIGEGSIGKLYKGKLENGSYVIIRSLALRKKFSIQNLKARLDLLSKLHHPNLVSLLGHCIDGSGKDGASTNKLHLVYEYVQNGDYRTHLSEFSSDKALKWSDRLAILIGVAKAVHFLHTGIIPGCFRNQLKTNNVLLHEHRFPKLSDYGMSLISEEIENIEVKGVIPKSCQREELKDDVYNFGFILFESLAGPIASEKGEAFFLNEKASFDSHDGRKRIVDPIVLTSCCQESLSIVISITTKCISPQSSSRPSFEDVLWNLQYAAQVQATADADSIS* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2739 764 Pfam Leucine rich repeat 258 317 IPR001611 GO:0005515
Tpr6g2739 764 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 5 762 - -
Tpr6g2739 764 PANTHER OS07G0166700 PROTEIN 5 762 IPR045272 GO:0004714|GO:0006468
Tpr6g2739 764 SUPERFAMILY L domain-like 93 366 - -
Tpr6g2739 764 Pfam Leucine Rich Repeat 143 161 IPR001611 GO:0005515
Tpr6g2739 764 SMART LRR_typ_2 188 212 IPR003591 -
Tpr6g2739 764 SMART LRR_typ_2 280 303 IPR003591 -
Tpr6g2739 764 SMART LRR_typ_2 235 258 IPR003591 -
Tpr6g2739 764 SMART LRR_typ_2 140 164 IPR003591 -
Tpr6g2739 764 Gene3D Ribonuclease Inhibitor 258 389 IPR032675 -
Tpr6g2739 764 SUPERFAMILY Protein kinase-like (PK-like) 463 748 IPR011009 -
Tpr6g2739 764 Gene3D Transferase(Phosphotransferase) domain 1 567 762 - -
Tpr6g2739 764 Gene3D Phosphorylase Kinase; domain 1 444 566 - -
Tpr6g2739 764 Gene3D Ribonuclease Inhibitor 25 257 IPR032675 -
Tpr6g2739 764 Pfam Protein tyrosine and serine/threonine kinase 485 746 IPR001245 GO:0004672|GO:0006468
Tpr6g2739 764 ProSiteProfiles Protein kinase domain profile. 483 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2739 Tpr-Chr6 29947040 29951717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2739 6 693 Miscellaneous Gene Families AT5G14210 55.603 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Tpr6g2739 PK_Tyr_Ser-Thr 3.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2739 - - gmx:100813412 1134.4