Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2730 ATGGAAGAAGACAACAATACCAGAACCGTTAGCTCCACCACCACCACCACCACCACCACAATGGATCCCAAAACCGGGTTCAACTCAATTTCCAGAACCTTCCAAACTCTAAGACCCCCACTAAACCTTCCACCACCACACGCCACAATCTCCGCCGCAACCTACATTCTCTCCCTCCGCCACAAATCCCCTTTCTCCTCCTCCACCACTCTCCTCATCGACTCATCCACATCTCATCAACTATCTTACTCCAACTTCATCCAACGCTCAAAAACCCTCGCTAAAAACCTCACTCTCCGCGGACTCACCAAACACCACACCGCATTGATACTTTCCCCAAACATTTTCCAGGTTCCAATCCTCTACTTCGCATTACTCTCTATCGGCGTCGTTATTTCACCCGCAAATCCAATTTCAACAACTTCCGATATTTCTCATTTCATAAATCTCTCTAAACCTGTAATCGCTTTTACGACGTCGTTTTGTGGAAACCTTCCGAAACTGAAACTACCTCTCGGAACGATTCTCATTGACTCGCCCGAGTTTGACTCACTCACCACGGAAGAAGCTAAAGATGATATTTCGACGACGACAGTGTTACCGGAGGTGAGTCAATCTGATGTGGCGGCGATTCTGTATTCGTCGGGGACTACAGGGAAATCGAAAGGTGTGATGCTTACACACCGGAATTTAACGGCCACGGTGGCGGCGTATGACGCTGTTCGGATTCCGACGGAGAGTCCTGCGGTGTCTTTGGTAACGGTACCGTTTTTTCATGTGTATGGTTTTACAATTCTGTTGAAATCTGTGGCTATGATGGAAACGGTTGTGGTGATGGAGAGATTTGGATTGGGGAAAATGTTGAGTGTTTTGGAGAGGTTTCGAGTGACAAATCTAGTGGTGGCGCCGCCGGTTGTGGTGGCGATGAGTAAAGAGGGAGTGACGGAAGGGTATGATTTGTCGTCGTTGAAAAGTGTTGTTTGTGGTGGTGCTCCGTTGGGAAAGGATAATTTTGATGCTTTCAAAGCAAAATTCGCTCAAGTTTCCATTATTCAGGGATATGGCTTAACTGAGTCAACAGCCGGTGTTATCCGAATAGTAGGTCCTGAGGAAGCTAGCCGGGCAGGAACTACGGGTAGGCTGATATCAGGGGTGGAAGCTAAAATAGTGAACTCCGACACAGGAGAGGCAATGTCTCCAGGCGAACAAGGGGAACTTTGGGTTAGAGGACCTCCAATTATGAAAGGTTATGTTGGGGATCCAGTGGCAACTTCTGACACTTTAGTGGATGGATGGTTGAGAACTGGGGATATTTGCTATTTTGACAATGAAGGTTTCGTGTATGTTGTAGACAGGTTGAAAGAATTGATCAAATATAAAGGTTACCAGGTAGCTCCTGCAGAGCTGGAACAACTACTCCAGTCTCACCCAGAGATAAAAGATGCTGCAGTTATTCCATACCCTGATGAGGATGCTGGTCAGGTTCCCCTAGCTTTTGTGATAAGGCAACCTCAATGCTCAATGGGTGAAGCAGAAATAATAGATTTTGTAGCCAAACAGGTTGCACCATACAAGAAGATAAGACATGTAGTATTTGTCAATTCCATACCAAAGAATGCAACTGGAAAGATACTAAGGAAGGACTTGTTGAATAAAATTCTCCAGCAACAAACTTTCCCTAGGTTATAA 1689 0.4589 MEEDNNTRTVSSTTTTTTTTMDPKTGFNSISRTFQTLRPPLNLPPPHATISAATYILSLRHKSPFSSSTTLLIDSSTSHQLSYSNFIQRSKTLAKNLTLRGLTKHHTALILSPNIFQVPILYFALLSIGVVISPANPISTTSDISHFINLSKPVIAFTTSFCGNLPKLKLPLGTILIDSPEFDSLTTEEAKDDISTTTVLPEVSQSDVAAILYSSGTTGKSKGVMLTHRNLTATVAAYDAVRIPTESPAVSLVTVPFFHVYGFTILLKSVAMMETVVVMERFGLGKMLSVLERFRVTNLVVAPPVVVAMSKEGVTEGYDLSSLKSVVCGGAPLGKDNFDAFKAKFAQVSIIQGYGLTESTAGVIRIVGPEEASRAGTTGRLISGVEAKIVNSDTGEAMSPGEQGELWVRGPPIMKGYVGDPVATSDTLVDGWLRTGDICYFDNEGFVYVVDRLKELIKYKGYQVAPAELEQLLQSHPEIKDAAVIPYPDEDAGQVPLAFVIRQPQCSMGEAEIIDFVAKQVAPYKKIRHVVFVNSIPKNATGKILRKDLLNKILQQQTFPRL* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2730 562 SUPERFAMILY Acetyl-CoA synthetase-like 71 555 - -
Tpr6g2730 562 Gene3D - 44 454 IPR042099 -
Tpr6g2730 562 Gene3D - 455 557 IPR045851 -
Tpr6g2730 562 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 21 552 - -
Tpr6g2730 562 Pfam AMP-binding enzyme C-terminal domain 468 543 IPR025110 -
Tpr6g2730 562 MobiDBLite consensus disorder prediction 7 22 - -
Tpr6g2730 562 MobiDBLite consensus disorder prediction 1 22 - -
Tpr6g2730 562 ProSitePatterns Putative AMP-binding domain signature. 211 222 IPR020845 -
Tpr6g2730 562 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 552 - -
Tpr6g2730 562 CDD 4CL 47 549 - -
Tpr6g2730 562 Pfam AMP-binding enzyme 70 459 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2730 Tpr-Chr6 29865979 29877243 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2730 13 549 Monolignol Biosynthesis Gene Families AT5G63380 49.455 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2730 - - gmx:100801143 680.633