Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2728 ATGGGAAGGAATTTTTTATTGCAACTCAATATTTGTTTCATTGTTATGCACTTGTTAGCATGTTCAAGAGTGCAAAGAGGGCACTGCTTAGTGCCACAAAGGTCCATTATAAGCATTGGTGCTGTGCTTGATTTGGTTTCATTAATGGGAAAACATCAGAAAATAGCAATGGAAATTGCAGTTGAAGAGTTTAACAACCATTTGAGTTCTTCTAAACTGGATTTGCAGGTAAAAGATTCACATGGAAATTCTGCTCAAGTAATTGCAAGTGTTATGGATTTCTCAAAGATCAACCAAGTGCAAGCCATCATAGGAACTATTACACACAATGAAGCAACACTAGCAAGTGAATTAAGTGACCCCATAAACAACATTCCTATCATGTCTCTAACTTCTTTTGCAAGTAAACCACAATTATCATCTCCTAAATTACCACATTTCATCCAAGTAGGAGATGATATTAACCTTAACATGCAATGTATTGCATCAATTGTAGGAAAATTCAAATGGAAAAAAGTGACAGTAATATATGAGCTTAACAATAATGACTTTTCTTCTGATCCAGGAATACTACTTAGCCTCTCTTATTCTCTTAAACTTATTGGTTCTGAGATTGATAATCACTTAGCTTTTCCTTCACTTTCATCTCTTTCAAATCCAAAATCTACAATTGAAAATGAGCTTAATAAGCTGAAAAAAGAGACTAATAGAGTCTTCTTGATTGTTCATTCTTCTTTAGAGCTAGCCAACATGCTTTTTGAGAAAGCAAAACAAATAGGTTTGATGGAAAAAGGTTCTGTTTGGATTATACCAAATGAAGTTTCTGGTCTTCTTGATTCAGTTAACTCTTCTGTTATATTCAACATGCAAGGTGTTATTGGATTTAAAACACATTTCATGGAAATGAATGAGGGTTTAAGAAAATTTAAATTCAAATTCCAAAGAAAATTTGCATTAGATTATCCTCAAGAAGATAACATAATCCCAAGTATCTTTGCATTTCAAGCATATGATGCAACTAAGGCTATTTTTGAAGCTGCAAATAAGTCATCATCACATGGAAAATTCATTCTTGACAAAGAATTCTCAAAGAAGGGACAATTGCTGCATTCACCAATTTTCAACATAATTAATGTGATAGGGAAAAGTTATAGAGAAATGGCATTTTGGTCACCAAAACTAGGTTTTTCGAAGAACATTGTTAGCGATAATTATGATGATGATGATGATGATTCTGATGGAATTTTCGACACGGTTTATTGGCCAGGAGACATGAAATCCATTCCTAAGGGTCATAATAAAGAGGAAAGGAATTTGACAATAGCTATACCTTCCAAAGGTGCTTTTTCACAGTTTGTGAATGTGGAATATGATCATAGCAAAAATGTAACTTCCATTAATGGTTTTTCAATCAAAGTCTTTGAAGCAGCTGTTAGACGTTTACCTTATGTTTTGAATTACAATTTTTCTCCCTTTAGTGGCTCATATGATGAAATGGTTGATCAAGTCTACAATAAGACATTGGATGCTGCTGTTGGTGATACATCAATAGTGGCATATAGATATCATTTAGTGGACTTCTCACAACCTTATGTTGAATCTGGCCTTCATATGGTGGTTACTGAACAACCAGCAAAATCAAAAACTTGGAAGTTTTTGGATGCCTTTACTAAAGAGATGTGGCTGATGATGATAGTTATGCATGTTTTTGTGGGATTTGTTATTTGGATGATTGAAAGAGAAGTAAATGAATATTTAAGGGGATTTGGGTCCATGCTATGGTTTTTAGTCACCGTACTATTTTATGCACATAGAGAACCAATAAGAAGACCCTTAGCTAAAATTGTGCTGACACCATGGTTATTTGCTATTTTCATTGTGACAAATAGTTTCATAGCAAGTTTAACATCCATAACTATTTCACAAGTAAAGCCATCTGTGTTAGATATCCAGACCCTTAAAGAAAGAAATCATACAATTGCTTGTGATGGGAATTCCTTCATTGTCAAGTATTTGACTGATGTACTAAAATTCAAGCCAGAAAACATTCGGAAAATAAATTCCATGAGTGACTACCCTGCTGCCTTTGAGAACAAGGAAATAGAAGCCGCCTTCTTTGTCGCGCCTCATGCTAAAGTCTTTCTAGCAAAGTACTCATGTAAGGGCTTCATCAAAGCGAAGAACACTTTCAGGCTCGGTGGCTTCGGTTTTGTATTTCCAAAGGGTTCGAGTCTTGCTGCAGATATATCGGAGGCATTGTTGAATATGATAGAGAGTGGAGAAACAGAACAGCTAGAAAAAGATATGTTGAATGAGATAGAGAATGAAAGCAAATTTAACTGTTCTTCTTCAGAGAGTAAGGGAAAAAACAACACATCGATAGGCCTTTCGCCTTTTGTTGGTCTGTTTTTGATCTGTTCTACTTTTGCTAGTCTTGCTTTGTCATATCACGTGATTTGTTTGTTGGTGAAGAATGTAGACACTTTGACAAGCTACCTAGTATCGACACTAACACAGTTATGGAGAATATGGAGATGGACAACCAACTTTTTTGCTCGGTGCTGTTTGAAAATCCGATCGATAATTATCAGAAGTTGCACAGAAACAATGGCAGAAGAGAATGTAACAAATAGCCAGCAAATGCCAGTTGTGATTGAGCTTGTTGATAGTGTATTGGCTGCTCATGCTTCATGA 2694 0.3523 MGRNFLLQLNICFIVMHLLACSRVQRGHCLVPQRSIISIGAVLDLVSLMGKHQKIAMEIAVEEFNNHLSSSKLDLQVKDSHGNSAQVIASVMDFSKINQVQAIIGTITHNEATLASELSDPINNIPIMSLTSFASKPQLSSPKLPHFIQVGDDINLNMQCIASIVGKFKWKKVTVIYELNNNDFSSDPGILLSLSYSLKLIGSEIDNHLAFPSLSSLSNPKSTIENELNKLKKETNRVFLIVHSSLELANMLFEKAKQIGLMEKGSVWIIPNEVSGLLDSVNSSVIFNMQGVIGFKTHFMEMNEGLRKFKFKFQRKFALDYPQEDNIIPSIFAFQAYDATKAIFEAANKSSSHGKFILDKEFSKKGQLLHSPIFNIINVIGKSYREMAFWSPKLGFSKNIVSDNYDDDDDDSDGIFDTVYWPGDMKSIPKGHNKEERNLTIAIPSKGAFSQFVNVEYDHSKNVTSINGFSIKVFEAAVRRLPYVLNYNFSPFSGSYDEMVDQVYNKTLDAAVGDTSIVAYRYHLVDFSQPYVESGLHMVVTEQPAKSKTWKFLDAFTKEMWLMMIVMHVFVGFVIWMIEREVNEYLRGFGSMLWFLVTVLFYAHREPIRRPLAKIVLTPWLFAIFIVTNSFIASLTSITISQVKPSVLDIQTLKERNHTIACDGNSFIVKYLTDVLKFKPENIRKINSMSDYPAAFENKEIEAAFFVAPHAKVFLAKYSCKGFIKAKNTFRLGGFGFVFPKGSSLAADISEALLNMIESGETEQLEKDMLNEIENESKFNCSSSESKGKNNTSIGLSPFVGLFLICSTFASLALSYHVICLLVKNVDTLTSYLVSTLTQLWRIWRWTTNFFARCCLKIRSIIIRSCTETMAEENVTNSQQMPVVIELVDSVLAAHAS* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2728 897 Pfam Receptor family ligand binding region 54 353 IPR001828 -
Tpr6g2728 897 Gene3D - 633 766 - -
Tpr6g2728 897 SUPERFAMILY Periplasmic binding protein-like II 435 767 - -
Tpr6g2728 897 Pfam Bacterial extracellular solute-binding proteins, family 3 465 767 IPR001638 -
Tpr6g2728 897 SMART GluR_14 438 772 IPR001320 GO:0015276|GO:0016020
Tpr6g2728 897 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 849 - -
Tpr6g2728 897 Gene3D - 432 561 - -
Tpr6g2728 897 Gene3D - 634 733 - -
Tpr6g2728 897 Gene3D - 32 155 - -
Tpr6g2728 897 Pfam Ligand-gated ion channel 768 806 IPR001320 GO:0015276|GO:0016020
Tpr6g2728 897 Gene3D - 156 326 - -
Tpr6g2728 897 PANTHER GLUTAMATE RECEPTOR 34 849 - -
Tpr6g2728 897 CDD GluR_Plant 439 770 - -
Tpr6g2728 897 SUPERFAMILY Periplasmic binding protein-like I 34 431 IPR028082 -
Tpr6g2728 897 PIRSF IGluLR_plant 3 367 IPR017103 -
Tpr6g2728 897 PIRSF IGluLR_plant 352 848 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2728 Tpr-Chr6 29854951 29861637 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2728 33 842 Ion Channels AT2G29100 30.983 2.62e-111 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2728 - - mtr:MTR_5g059920 1286.17