Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2727 ATGAACATTTCAGGAATGGGAAGGAATTCTTCATTGCAACTCAAAATTGTATGCTTCAATATTGTCTTACATTTGTTAGCATGGTCAAGGATGCAAAGAAGCCACTGCTTGGTGCCTCAAAGGTCCATTATGAGCATAGGTGTTGTGCTTGATTTGGATTCATTAATGGGAAAACAACAGAAAATAGCAATGGAAATTGCAGTGCAAGAGTTCAACAACCAATTAAGTTCTCCCAAGCTGGATTTGCAGATAAAAGATTCACATGGAAATTCTGCTCAAGTAATTGCTGGTGTTATGGACCTCTCATTGAGCAACCAAGTGTTGGCCATCACAGGAACTATTACACACAATGAAGCAGCTCTAGCAAGTGAATTCAGCGACACCATAAAGAACATTCCTATCATGTCTCTAACTTCTTTTACAGGCAGACCAGAATTATTATCTTCAAGATTGAAACATTTCATCCAAGTAGGGGATGATATTAACCTTAACATGCAATGCATTGTAGCAATTGTAGGATATCTCAAATGGAAAAAGGTAACAGTAATATATGAACTTAATAATGATTTTTCCTCTGATCAAGGAAGGATACTACTTAGTCTCTCTTATTCTCTTAAACTAGTTGGTTCTGAAATTGATAACCATTTAGCTTTTCCTTCCTTATCCACTCTTTTAGATCCAAACACTACAATTGAAAATGAGCTTAATAAGCTGAAAAGGAAGAGTAATAGGGTCTTTTTGATTGTTCATTCTTCTTTGGAGCTGGCTAACATGCTTTTTGAGAAAGCAAATCAAATAGGTTTGATGGAAAAAGGATCTGTGTGGATTATCCCAAATATGGTTGCTGGTCTTCTTGATTCAGTTAACTCTTCTGTTATATTCAACATGCAAGGTGTTGTAGGATTTAAAACATACTTTATGGAAATGAATGAAGCTTTTAGAGAGTTCAAATTCAAATTTCGAAGAAGGTTTGCACTAGAATACCCTAAAGAAGATAACATTAACCCAAGTATCTTTGCACTTCAAGCATATGATGCAACTTGGGCTATTTTTGAGGCTGCAAATAAGTCATCGTCACAAGGAAAGTTTAGCCTTGAACAATTCTCAGCAAAGGTTTTGTCAAATAAATTTGACAGACTAAGTAGAAACACTTTCTCAAAGAATAGACCATTGATGCAATCACAATCCTTTAACATAATAAATGTGATAGGGAAAAGTTATAGAGAAATGGCATTTTGGACTCCAACACTTGGTTTTTCCAAGAACATATTTAGCAATCAATTAATGGAGAAGAAAAACACAAACAATGATCATGATTCTAATGGAGTTTTCAGCACAGTTTATTGGCCTGGAGACATGCAATCAGTTCCAAAGGGATGGACTCACAGTAATGAGGAAAGATTATTGAAAATAGGAGTACCTTCCAATGGTGCCTTTACTCAGTTTGTGAATGTAACACATGACAAGAGTATGAACGGATCTTCAATCACTGGTTTCTCTATTACTGTCTTTGAAGAAGCTGTCAAACTTTTACCTTATGATTTACACTACAATTTTGTTCCTTTCAATGGCTCATATGATGAAATGGTTCATCAGGTCCACAATAAAGCATTGGATGGTGCGGTTGGTGATACAGGGATAATGGCATATAGATATAATTTAGTTGACTTCTCACAACCTTATATTGAATCTGACCTCCACATGGTGGTTACTGAACAACCAGCAAAATCAAAAACATGGAAGTTTTTGGATGCCTTTACTAAAGAGATGTGGCTTTTGATAGCAGCTATTCATATTTTTGTAGGCTTTGTTATTTGGTTGGCTGAAAGGGAAGATAATCCAGATCTAAGGGGGATTGGTTCCATGCTATGGTTTTTAGTCACTGTACTATTTTATGCACATAGAGAACCAATAAGAAGACCGTTAGCTCGAATTGTGCTGGCACCGTGGTTATTTGCTATTTTCATTGTGACAAATAGTTTCACAGCAAGTTTGACATCCATAACTATATCACAAGCAAAGCCATCTGTGTTAGATATACAAACCCTTAAAGAAAGAAACTCACCAGTTGGGTGTAATGGAAATTCATTCATTGTGAATTACTTGACAGAAGTACTAAAGTTCAAGCCTGAGAACATTAGGAAAATAAATTCCATCAGTGATTACCCTGCTGCCTTTGAGAACAAGGATATAGAAGCCGCCTTCTTTGTCGGACCGCATGCTAGAGTCTTTCTAGCAAAGTACTCGTGTAAAGGACTAATCAACGCAGGGAACATTTTCCGGCTTGGTGGCTTTGGCTTTGCATATCCAAAAGGTTCTAGTTTGGCTATTGATATATCAGAGGCATTGCTGAATATGATAGAGAGTGGGCAAATAAAAGAGCTAGAAAAAGATATGTTGAATAAGCTAAAGAATGAAGGCATAGCCAATTGTTCTTCAAAGAAAAAGGAGAAAGATAATTCATCAATTGACATACCACCTTTCCTTGGTTTATTTTCCATTTGTTCTTCTTTTGCTATTCTTGCTTTGTCATATCACACAATTTGTTTGTTGGTGAAGAAGAACTTAGAGACCTTGACATACCACATAGTATTAACATTAATTCGATTGTGGAGAATATGGAAATGGACAACCAAATACTTCTCTCGGATCATGAGAAGAGTATGCAGTTGCATAGAAACAAGAAATGCAGAAGAGGATGTCAATAATAGCCAGCAAAACCCAGTGATAGTGGTTGCTCATGCTTCATCATGA 2754 0.3627 MNISGMGRNSSLQLKIVCFNIVLHLLAWSRMQRSHCLVPQRSIMSIGVVLDLDSLMGKQQKIAMEIAVQEFNNQLSSPKLDLQIKDSHGNSAQVIAGVMDLSLSNQVLAITGTITHNEAALASEFSDTIKNIPIMSLTSFTGRPELLSSRLKHFIQVGDDINLNMQCIVAIVGYLKWKKVTVIYELNNDFSSDQGRILLSLSYSLKLVGSEIDNHLAFPSLSTLLDPNTTIENELNKLKRKSNRVFLIVHSSLELANMLFEKANQIGLMEKGSVWIIPNMVAGLLDSVNSSVIFNMQGVVGFKTYFMEMNEAFREFKFKFRRRFALEYPKEDNINPSIFALQAYDATWAIFEAANKSSSQGKFSLEQFSAKVLSNKFDRLSRNTFSKNRPLMQSQSFNIINVIGKSYREMAFWTPTLGFSKNIFSNQLMEKKNTNNDHDSNGVFSTVYWPGDMQSVPKGWTHSNEERLLKIGVPSNGAFTQFVNVTHDKSMNGSSITGFSITVFEEAVKLLPYDLHYNFVPFNGSYDEMVHQVHNKALDGAVGDTGIMAYRYNLVDFSQPYIESDLHMVVTEQPAKSKTWKFLDAFTKEMWLLIAAIHIFVGFVIWLAEREDNPDLRGIGSMLWFLVTVLFYAHREPIRRPLARIVLAPWLFAIFIVTNSFTASLTSITISQAKPSVLDIQTLKERNSPVGCNGNSFIVNYLTEVLKFKPENIRKINSISDYPAAFENKDIEAAFFVGPHARVFLAKYSCKGLINAGNIFRLGGFGFAYPKGSSLAIDISEALLNMIESGQIKELEKDMLNKLKNEGIANCSSKKKEKDNSSIDIPPFLGLFSICSSFAILALSYHTICLLVKKNLETLTYHIVLTLIRLWRIWKWTTKYFSRIMRRVCSCIETRNAEEDVNNSQQNPVIVVAHASS* 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2727 917 SMART GluR_14 470 802 IPR001320 GO:0015276|GO:0016020
Tpr6g2727 917 Gene3D - 467 591 - -
Tpr6g2727 917 Gene3D - 161 335 - -
Tpr6g2727 917 PANTHER GLUTAMATE RECEPTOR 40 884 - -
Tpr6g2727 917 CDD GluR_Plant 469 800 - -
Tpr6g2727 917 Pfam Ligand-gated ion channel 798 835 IPR001320 GO:0015276|GO:0016020
Tpr6g2727 917 Gene3D - 40 160 - -
Tpr6g2727 917 Gene3D - 340 466 - -
Tpr6g2727 917 Pfam Receptor family ligand binding region 61 367 IPR001828 -
Tpr6g2727 917 SUPERFAMILY Periplasmic binding protein-like II 445 797 - -
Tpr6g2727 917 Gene3D - 665 763 - -
Tpr6g2727 917 Gene3D - 764 797 - -
Tpr6g2727 917 SUPERFAMILY Periplasmic binding protein-like I 44 460 IPR028082 -
Tpr6g2727 917 Pfam Bacterial extracellular solute-binding proteins, family 3 493 797 IPR001638 -
Tpr6g2727 917 PIRSF IGluLR_plant 10 864 IPR017103 -
Tpr6g2727 917 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 884 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2727 Tpr-Chr6 29847363 29852744 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2727 40 843 Ion Channels AT2G29120 29.845 2.29e-102 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2727 - - mtr:MTR_5g059920 1333.93