Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2715 ATGGCATCTTCATCAAGCTGCTATTCAAATTCACCATGTGCTGCCTGCAAATTTTTGAGAAGGAAGTGCATGCCAGATTGCATATTTGCTCCATATTTTCCACCAGAAGAACCACAAAAATTTGCAAATGTGCACAAAATATTTGGTGCAAGTAATGTAAGTAAACTTTTGAATGAAGTTCAAGCACATCAAAGAGAAGATGCAGTGAATTCTCTTGCTTATGAAGCTGAAGCAAGAATTAAAGATCCTGTTTATGGTTGTGTTGGTGCTATTTCAATTCTTCAAAGACAAGTTATTAGACTCCAAAAGGAACTTGATGCTACAAATGCTGATTTGATTCGATATAGTACTTGCACCGATCATATATTGCCGAATAATCAACATCAAGATCACCAAGCTACAAGGATTCATGAAGATGGAGGAGGTTCTTCTCTTGGTCCTCCTGCAACTTTTTACTATCCTTCTCCTTGGAACAATGATCCACTTGGAGATGGTAATTTTCATACAGGAGGAGGTGATAATATATAA 528 0.3693 MASSSSCYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQAHQREDAVNSLAYEAEARIKDPVYGCVGAISILQRQVIRLQKELDATNADLIRYSTCTDHILPNNQHQDHQATRIHEDGGGSSLGPPATFYYPSPWNNDPLGDGNFHTGGGDNI* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2715 175 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Tpr6g2715 175 Coils Coil 91 111 - -
Tpr6g2715 175 Pfam Lateral organ boundaries (LOB) domain 12 108 IPR004883 -
Tpr6g2715 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 5 162 - -
Tpr6g2715 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2715 Tpr-Chr6 29739679 29741535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2715 6 118 AS2 family AT3G27650 82.301 1.25e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr6g2715 LOB 2.7e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2715 - - gmx:100800167 264.618