Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2710 ATGTCCTCCTCCTCCTTCTCCATCATATCAAATTTACTTCCTTCCCCACACTCCAACATTCACAACTTCCACACCTTCTTCATCTCCAACCACAAGAAACCCCAAACCTCTTTTCTCATATCCAAATTCTCCCATCATTCCTCTAACTTCCATAACACTCTCGCCGCCAAACACCTCCGGTCCCCTGCCTCCATTTTACCCGGAGGTGATTGGTGGACATTACCAAATCATCCCGAAGAAGACGATGCAGAACCGACTGCGGCGATGCTCGCTCTCAGACGAATGTGGGATTTGGTTGCTGATGAGCGCTGGGTCGCACTTGGAGCTTTCGGGTCTCTTGTCATTGCTGCTCTTTCCGAAATCACCATGCCAAGTATATTAGCAGCATCAATATTTTCAGCACAGAGTGGTGAGACTGTGGCATTTTCTAGGAATGCAATGTTTTTGGTTCTTCTATGTTTTACTTCAGGGATATGCAGGCTCGCCGCAGATTGTCAACGGCTTTCGCATGTTATAGGAAATGATCTTCAGTTGATATTACGCAACACTTTCCAGGGAACAGGAGCGATAATTAATTTACTGGCTTTATCTTGGCCTCTAGCATTATCTGCATTGATGATTTGTGCTGTGTTATCTGCAATTTTCCTGGTTTATGGCAGGTATCAAAGAAAAGCAGCAAGGTTAACCCAAGATTTCACAGCTTGTGCCAATGACGTAGCTCAGGAGACACTTTCTTTGATAAGAATTGTTCGAGTGTATGGAACCGGAAAAGAAGAATTTGAAAGGTACCATCAGTGGCTACAAAAATTAGCATTTATTAGCGTTCGAGAGAGTGTGGGTAATGGTTTCTGGAACCTGAGCTTTAACACTCTTTATCGGTCAACTCAGATAGTTGCAGTGATTTTTGGCGGAATGTCTGTCCTCAGCTGTCGTGTAACTGCTGAGCAACTTACTAAGTATGTATTATACTGTGAGTGGTTGATTTATGCTGCTTGGAGGGTGACAAACAGCTTATCATCATTACTGCAGTCCATTGGAGCATCTGAACAAATTTTCCAATTGATGAATCTTTTGCCCTGTGACCAATTCTTAGTGAAAGGAATTAAGTTGCAGAGGTTAATAGGTCATATTCAGTTTGTAAATGTATCATTTCAATATCCAGCAAGGAGTATGATGCCTGTTCTAGATCACTTAAACTTCTCTGTAAAACCAAATCAAGTCATTGCCATTGTTGGTCTGAGTGGTAGTGGAAAAAGCACATTAATCAACCTTTTACTTCGTCTCTATGAGCCTAGTAGCGGCCAGATATTTATTGATGGTATCCCTCTTAAGGAGTTGGATATCAGGTGGCTGAGGCAGAACATCGGATATGTTTCACAGGAACACCATATCTTTCACATGGACATAAAGTCAAACATAAAATATGGTTGCCCTAGGAACATAAATCAAGGAGATGTTGAACAGGCAGCAAAACTAGCCTATGCCCATGACTTTATTTCATCACTTCCTAATGGTTATGAAACCCTTGTTGATGACAATGTACTTAGCGGGGGACAAAAGCAGCGAATCGCCATTGCGAGGGCCATTCTTAGGGACCCTGTTATTATGATTCTTGACGAACCAACCAGTGCCTTGGATTCTGAAAGTGAGCATTACATCAAGGAGGTATTGTATGCATTCAAAAATGAATCTAAATCAAGAACCACCATTATCATAGCACATAGGCTTTCTACTGTAAAAGCTGCTGACAGGATCATTGTTATGGATAATGGTCAGATTATTGAGATGGGTAACCATGAAGAGCTTATAGTCAAGAATGGACTCTATGCGAAGTTAAATAAATTTCAAGCAGATATTGTTGTAACTTGA 1869 0.4152 MSSSSFSIISNLLPSPHSNIHNFHTFFISNHKKPQTSFLISKFSHHSSNFHNTLAAKHLRSPASILPGGDWWTLPNHPEEDDAEPTAAMLALRRMWDLVADERWVALGAFGSLVIAALSEITMPSILAASIFSAQSGETVAFSRNAMFLVLLCFTSGICRLAADCQRLSHVIGNDLQLILRNTFQGTGAIINLLALSWPLALSALMICAVLSAIFLVYGRYQRKAARLTQDFTACANDVAQETLSLIRIVRVYGTGKEEFERYHQWLQKLAFISVRESVGNGFWNLSFNTLYRSTQIVAVIFGGMSVLSCRVTAEQLTKYVLYCEWLIYAAWRVTNSLSSLLQSIGASEQIFQLMNLLPCDQFLVKGIKLQRLIGHIQFVNVSFQYPARSMMPVLDHLNFSVKPNQVIAIVGLSGSGKSTLINLLLRLYEPSSGQIFIDGIPLKELDIRWLRQNIGYVSQEHHIFHMDIKSNIKYGCPRNINQGDVEQAAKLAYAHDFISSLPNGYETLVDDNVLSGGQKQRIAIARAILRDPVIMILDEPTSALDSESEHYIKEVLYAFKNESKSRTTIIIAHRLSTVKAADRIIVMDNGQIIEMGNHEELIVKNGLYAKLNKFQADIVVT* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2710 622 PANTHER ABC TRANSPORTER B FAMILY 47 159 - -
Tpr6g2710 622 PANTHER ABC TRANSPORTER B FAMILY 159 619 - -
Tpr6g2710 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 616 IPR027417 -
Tpr6g2710 622 ProSitePatterns ABC transporters family signature. 515 529 IPR017871 GO:0005524
Tpr6g2710 622 Gene3D ABC transporter type 1, transmembrane domain 159 374 IPR036640 GO:0005524|GO:0016021
Tpr6g2710 622 Gene3D - 375 616 IPR027417 -
Tpr6g2710 622 SMART AAA_5 404 592 IPR003593 -
Tpr6g2710 622 SUPERFAMILY ABC transporter transmembrane region 93 361 IPR036640 GO:0005524|GO:0016021
Tpr6g2710 622 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 377 615 IPR003439 GO:0005524
Tpr6g2710 622 Pfam ABC transporter transmembrane region 160 325 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr6g2710 622 PANTHER ATP-BINDING ABC TRANSPORTER 159 619 - -
Tpr6g2710 622 PANTHER ATP-BINDING ABC TRANSPORTER 47 159 - -
Tpr6g2710 622 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 160 343 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr6g2710 622 Pfam ABC transporter 395 543 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2710 Tpr-Chr6 29696920 29707640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2710 187 616 Calmodulin-binding Proteins AT2G36910 36.009 6.82e-72 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2710 - - gmx:100797529 891.723