Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2702 ATGAGCTGCTGGTTTTTTAACAAAGGGGCATTTGCAAAGAAATTGAAAAGCACTACACTCTCTTTAGCTGATCAGATCAAGGATTGCGGTGCATATTGCGAATGTCCAAACTGTCATTATCGTATAGACAACAGCGATGTTTCGTGGCCTGGCCTTCCTCTTGGTACAAAGTTTGATCCTTCTGATATAGAACTATTGGAACATTTAGCAGCTAAATGTGGTGTTGGGAATAGAGAGCCTCACCTGTTTATTGAAGAGTTCATCCCAACATTGGAAGGAGACCAAGGCATTTGCTATGCACATCCTGAAAATCTTCCAGGTGCTAAGAAAGATGGGAGTAGTGTTCATTTCTTTCACAGAACAATGAATGCATATAGTATTGGTCAACGAAAGCGTCGAAAGATTCATCATCAAGGTTTGACTGAACCCCATGTACGCTGGCATAAGACTGGTAAAACCAAAGCTATAATAGAAAATGGAGTACATATGGGCTTTAAAAAGATCATGGTTCTATATATAAGATCTGGGAATGAATCCAAGTCCTACAAATCCGACTGGAAAATGCATCAGTACCATCTAGGGACTGATGAAGATGAGAAGAATGGAGAATATGTGGTTTCAAAAATATTTTATAAACAGGTTGAGAAAATCGAGGAGAAACCAATGGCTGAAGAACATGATGACAGTATAACATTGCGAACAAATCCAACGACTCCAAAACCAAATCCTCCAAATCCACCACGCACAGGAAAATGTGTTGAAAATGATGATAACATTGATGAAACTGCACATTTGTCATTTGTAGAGGATGCCAAGTCGATCACTGTAGAATCACGTGCCCCTCAATCTGATATTCAGGATCACGGCAATGCAGAAAACTCAGCATGGTTGGCTGGTGTATCACAGGCTTTGGAAAAATCCTTATATGATGACTTAGATGACATATTATTGTGCAAGGAGATTTTAGATTCATCTACTCTATTTGATGATTTTGGATTGGACTCAATCACTACCAATGGCCTTGCATATTATGAAAACAAAATGACGGGAAACGGTAATGTAACTAGTGGAACATCAACTTCTGTCCTGGATACATTGGAATTGAGTAATCCTCCAGAAAACTTGGCATGCTTGGCTGGTGAATCACAGGCTTTGGAAAATTCTGAATATAAAGGCTTGGATGACTTATTATTGTGCAAGGAGATTTTAGATTGGTCTGCTCTACTTGATGATACTGGATTGGACTCGATCACTACCAAGGACATTCCATACTATGATAACAGAATGACGGGAAACAATAATATAACTAGTGGAACAACATCAACTTCTGTTCTGGATACACTGGAATTGGGTACTCCTCCAGATTTTGATCTTTCGAATTTGACATTTGGTTCTCAAGACAGCATCCTTGACTGGGTGGACCGGTTATGA 1431 0.3934 MSCWFFNKGAFAKKLKSTTLSLADQIKDCGAYCECPNCHYRIDNSDVSWPGLPLGTKFDPSDIELLEHLAAKCGVGNREPHLFIEEFIPTLEGDQGICYAHPENLPGAKKDGSSVHFFHRTMNAYSIGQRKRRKIHHQGLTEPHVRWHKTGKTKAIIENGVHMGFKKIMVLYIRSGNESKSYKSDWKMHQYHLGTDEDEKNGEYVVSKIFYKQVEKIEEKPMAEEHDDSITLRTNPTTPKPNPPNPPRTGKCVENDDNIDETAHLSFVEDAKSITVESRAPQSDIQDHGNAENSAWLAGVSQALEKSLYDDLDDILLCKEILDSSTLFDDFGLDSITTNGLAYYENKMTGNGNVTSGTSTSVLDTLELSNPPENLACLAGESQALENSEYKGLDDLLLCKEILDWSALLDDTGLDSITTKDIPYYDNRMTGNNNITSGTTSTSVLDTLELGTPPDFDLSNLTFGSQDSILDWVDRL* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2702 476 MobiDBLite consensus disorder prediction 220 250 - -
Tpr6g2702 476 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 3 373 - -
Tpr6g2702 476 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 373 474 - -
Tpr6g2702 476 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 373 474 IPR044799 GO:0003700
Tpr6g2702 476 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 373 IPR044799 GO:0003700
Tpr6g2702 476 Gene3D NAC domain 61 216 IPR036093 GO:0003677|GO:0006355
Tpr6g2702 476 ProSiteProfiles NAC domain profile. 52 212 IPR003441 GO:0003677|GO:0006355
Tpr6g2702 476 SUPERFAMILY NAC domain 41 212 IPR036093 GO:0003677|GO:0006355
Tpr6g2702 476 Pfam No apical meristem (NAM) protein 53 193 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2702 Tpr-Chr6 29625300 29629861 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2702 35 221 NAC Transcription Factor Family AT1G28470 50.754 3.02e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr6g2702 NAM 2.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2702 - - mtr:MTR_7g033320 584.719