Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2680 ATGTGTAACAAAAATAGTACTACTACTCTTTCTACAATAAAAACAAGATCAGTTACTATGAAGAAAAAAAAGAAACAAATTCATACAAATTCATCTTCTGTTTCTCCATCTTCATCTTCTTCTTCATCTTCTCTTAAACCAAACAAAAGAAAAAACAGAACAAAAAGAAAAAAACCAAAATATCTTAGTCTCAGATTACAGCTTTCACAACAACAAACACAAAAAAGTGAAAAAAACCAAAAACCAAAAAAAACCAACAAAAAAACCCAACACCAACAAAAGCAACAACCTCAATTGAATCATCATGTTTTCAATGATGATCTACAAACAGAGCAAGACATGCAAGAAGAAAACAACGTGGCTTTACTTTTCACATCTGACGGTGGAGCAACATTAAATGGACTACTAGAAGACGAATCAACGACATTAACGGCGGTGACAACAACGGAGGAAGAGGAAGAGTCTTTATCAGTGATGAGGTGTCCAGAGATGGAAGGGTTAGTGAAGAAAGCTATGAGGAAGAGAAATGATGAAGAAGAGAGTGAAGAAAGATGGGTTAGTTATTCAGAAGTTGTTGAAGAGACGAAGAAGGAAATGATGGAAGAAGTGAATAGTTGTATTGGGATTGAAACGATGTCGTTTTTGGGGTCTTTGTCTTTGAAATTGGATCATGATGGTATATTGAATGCTTGGTCTGATAAAGGTTCTCTTTATGTTGTTGATGCTGCTGCTGATGATGCCCCACAGACTGTTCCTGATTTGTTCAATGCTTCCTCCATCCTTCCCAATGCAATGTGGGATGGTTATGGGTGTGATGTTAATGGGAACACATGGAAAGTTCCTGATGGGGTTGGAGCTAGCAATAACAATATGAAGGTGAAGGAAGAAATGGGTTGGAAGCTTGGTCAAAGAGAGGCAAGTTTGTTGAGATACAAAGAAAAGAGGCAAAGTAGACTCTTCGCTAAGAGGATCCGTTATGAAGTTCGCAAGTTGAATGCTGAAAAACGGCCTAGAATGAAGGGACGATTTGTGAAGAGGGAATGA 1044 0.3755 MCNKNSTTTLSTIKTRSVTMKKKKKQIHTNSSSVSPSSSSSSSSLKPNKRKNRTKRKKPKYLSLRLQLSQQQTQKSEKNQKPKKTNKKTQHQQKQQPQLNHHVFNDDLQTEQDMQEENNVALLFTSDGGATLNGLLEDESTTLTAVTTTEEEEESLSVMRCPEMEGLVKKAMRKRNDEEESEERWVSYSEVVEETKKEMMEEVNSCIGIETMSFLGSLSLKLDHDGILNAWSDKGSLYVVDAAADDAPQTVPDLFNASSILPNAMWDGYGCDVNGNTWKVPDGVGASNNNMKVKEEMGWKLGQREASLLRYKEKRQSRLFAKRIRYEVRKLNAEKRPRMKGRFVKRE* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2680 347 MobiDBLite consensus disorder prediction 29 47 - -
Tpr6g2680 347 Pfam CCT motif 304 346 IPR010402 GO:0005515
Tpr6g2680 347 Coils Coil 346 347 - -
Tpr6g2680 347 MobiDBLite consensus disorder prediction 1 101 - -
Tpr6g2680 347 PANTHER CCT MOTIF FAMILY PROTEIN 42 347 - -
Tpr6g2680 347 MobiDBLite consensus disorder prediction 1 16 - -
Tpr6g2680 347 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 42 347 - -
Tpr6g2680 347 ProSiteProfiles CCT domain profile. 304 346 IPR010402 GO:0005515
Tpr6g2680 347 MobiDBLite consensus disorder prediction 48 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2680 Tpr-Chr6 29432029 29435842 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2680 217 346 C2C2-CO-like Transcription Factor Family AT1G73870 41.667 3.18e-21 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr6g2680 CCT 4.6e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2680 - - gmx:100798231 295.049