Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2670 ATGGAATTAGATCTTAGTTTTGAAAACAAAATCCCTTGTCTTTTTGGAGATTATCCTAAATATTCTTCTATGAAATTAGATATCCCCACAATTGTTTCCTCTAAATTTAATTCCCCATTTTCATATTCACCATCACATTGCACCACATTTTTGAACCAAAATTATTGCAATCCATTTAAGGAACATCATCTGAAGGGGTCAAATCATCACTCTAGTTTTCCTACAGTGGTTCCTTCCTCCATAGGCCCAATCACTATGATCCCGACCCCTTCGTATAAGGCTACACATAACAATGGGTCCCATAGAGAATCTACCGGTGCTCAAAATCCAATGATGTTTGAATCAAACAATAACAAAATGAAAACTATGCACGGTCGCCTAAATACTAGCAAAGGAGTTTGGGATTTGTCCAAAAAAAATATCTTTCAGTATGGTGAAACTTCACAACCTCAGGTGAGTCAATCTTTACCACCATCACTAGTTTATGATGCAGATCCATCTCCATCAATTAAGCGTAAGCATCAAGGAGATCTTTCATCCAATGGTGAAATTGAAAATAAACCCCAAGAAAATGATCTAGGACTCGTTCTTAGTGACCAAAAGCGACAAAATATGAGTCAAAAGAATAGTGAAATTCGACACAAGGATCCCGATACAATCAAAGGCCAATGGACTGCAGATGAGACTAGCAATCTTGTGGAATTGGTGGATACCTTTGGGTATGATTGGTCTATGATAGCTAAGTTTATGAATGGTAGGAACGGAAAACAATGCAGGGAGAGATGGTATAACCATCTTCAACCAAAAATTAAGAAAGCGTCATGGAGCGAAGAGGAGGAAAAAATACTGATTGAAGCTCATAAGAGACTTGGAAACAAGTGGACTAAAATTGCAAGAATGTTACCCGGGCGCACAGATAATGCTATCAAGAACCATTGGAACACTGCTATACGCACCCAATCCCGCAAGTACAAAAGGAACGGATGGAGTAGTTCGAAAAATTCAATACTTCAGAAATACATTAATGAAATCACTTCTACTAAGGAAGTTGAGAAAGATCACGATGAAGAATTGGCAACTGAAGAGGATGAACAACCTGGTGGCTATATGGAAGTGATGTGCAATAATGGTGAAAATGGAATGGAGTTTTTTGTTGAGGTTCCCATGAAGGAGGAAATGGATTTCATGGAGATGATATGTAAAAATCCATAA 1212 0.3787 MELDLSFENKIPCLFGDYPKYSSMKLDIPTIVSSKFNSPFSYSPSHCTTFLNQNYCNPFKEHHLKGSNHHSSFPTVVPSSIGPITMIPTPSYKATHNNGSHRESTGAQNPMMFESNNNKMKTMHGRLNTSKGVWDLSKKNIFQYGETSQPQVSQSLPPSLVYDADPSPSIKRKHQGDLSSNGEIENKPQENDLGLVLSDQKRQNMSQKNSEIRHKDPDTIKGQWTADETSNLVELVDTFGYDWSMIAKFMNGRNGKQCRERWYNHLQPKIKKASWSEEEEKILIEAHKRLGNKWTKIARMLPGRTDNAIKNHWNTAIRTQSRKYKRNGWSSSKNSILQKYINEITSTKEVEKDHDEELATEEDEQPGGYMEVMCNNGENGMEFFVEVPMKEEMDFMEMICKNP* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2670 403 CDD SANT 224 266 IPR001005 -
Tpr6g2670 403 Gene3D - 274 318 - -
Tpr6g2670 403 PANTHER MYB PROTEIN-RELATED 110 358 - -
Tpr6g2670 403 CDD SANT 274 315 IPR001005 -
Tpr6g2670 403 Gene3D - 214 272 - -
Tpr6g2670 403 SMART sant 271 319 IPR001005 -
Tpr6g2670 403 SMART sant 220 268 IPR001005 -
Tpr6g2670 403 MobiDBLite consensus disorder prediction 169 221 - -
Tpr6g2670 403 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 267 321 IPR017930 -
Tpr6g2670 403 ProSiteProfiles Myb-like domain profile. 216 266 IPR001005 -
Tpr6g2670 403 MobiDBLite consensus disorder prediction 206 221 - -
Tpr6g2670 403 PANTHER MYB DOMAIN PROTEIN 100-RELATED 110 358 - -
Tpr6g2670 403 Pfam Myb-like DNA-binding domain 274 315 IPR001005 -
Tpr6g2670 403 Pfam Myb-like DNA-binding domain 221 266 IPR001005 -
Tpr6g2670 403 SUPERFAMILY Homeodomain-like 218 313 IPR009057 -
Tpr6g2670 403 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 216 266 IPR017930 -
Tpr6g2670 403 ProSiteProfiles Myb-like domain profile. 267 317 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2670 Tpr-Chr6 29351816 29356393 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2670 208 402 MYB Transcription Factor Family AT5G58850 40.758 1.07e-42 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr6g2670 Myb_DNA-binding 5.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2670 - - mtr:MTR_4g088015 405.986