Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2667 ATGAAATTAGATCTTAGTTTTGAAGAAAAAATCTCTTATCTTTTTGGAGATTATCCTAAATATTCTTCCATGAAAGTAGATATCTCCACAATTATTTCCTCCCAACCTAATTCCCCCTTTTCATATTCACCATCACATTGCACCACATTTTTGTACCAAAATTATTGCAATCCATTTAAGGATCATCATCTGAAGGGGTCTAATCATCACTCTAATTTTTCTACGGTGTTTCCTTCCTCCATGGGCCCAATCACTATGATCCCAACCCCTTCATACAAGGCTACACACAACAATGGGTCCCAAAGAAAATCTATCGGTGCTCAAAATCCAATGATGTTTGAATCAAACAATAACAAAATGAAAACTATGCATGGTCGCCTAAATACTAGCAAAGGAGTTTGGGATTTGTCCAAAAAAAATATCTTTCAGTATGGTGAAACTTCACAACCTCGGATGAGTCAATCTTTACCACCATCACTAGTTTATGATGCAGATCCATCTCTATCAATTAAGCGCAAGCATCAAGGAGATCTTTCATCCAATGGTGGAATTGAATACAAACCCCAAAAAAATGATCCAGGGCTCGTTCTTAGTGACCAAAAGCGACAAAAGATGAGTCAAAAGAATAGTGAAATTCGACACAAGGATTCCAATACAATCAAAGGCCAATGGACTGCGAATGAGAATAGGAATCTTGTCGAATTGATGGATAGTTTTGGGCGTAATTGGACTGAGATAGCTAAGTTTATGAATGGTAGGAACGCGAAACAATGCAGGGAGAGATGGTATAACCATCTTCGACCACAAATTAAGAAAGCGCCATGGAGCGAAGAGGAGGAAAAAATACTGATTAAAGCTCATAAGAAAGTTGGAAACAAATGGACTGAAATTGCAAGAATGTTACCCGGTCGCACTGAGAATGCCATTAAGAATCGCTGGAACACCGCGATACGCAGCCACAACCGCAAGAACAGAAAGAACCGGTGTAATAGTTCGAAAAACACAATACTTTGGAAATACATTAATGAAATCAATGCTAAGGAAGTTGATGAGAAAGAGAATGATGAAGATTTGACTACTCGAGAGGATGAAGAACCTAGTGGTGGTTATGAGTTTGAAAATGGAATGGAGTTTTTTGTTGAGGTTCCTATCAAGGAGGAAATGGATTTCATGGAGATGATCAATAATAATAGCCCTTAA 1200 0.38 MKLDLSFEEKISYLFGDYPKYSSMKVDISTIISSQPNSPFSYSPSHCTTFLYQNYCNPFKDHHLKGSNHHSNFSTVFPSSMGPITMIPTPSYKATHNNGSQRKSIGAQNPMMFESNNNKMKTMHGRLNTSKGVWDLSKKNIFQYGETSQPRMSQSLPPSLVYDADPSLSIKRKHQGDLSSNGGIEYKPQKNDPGLVLSDQKRQKMSQKNSEIRHKDSNTIKGQWTANENRNLVELMDSFGRNWTEIAKFMNGRNAKQCRERWYNHLRPQIKKAPWSEEEEKILIKAHKKVGNKWTEIARMLPGRTENAIKNRWNTAIRSHNRKNRKNRCNSSKNTILWKYINEINAKEVDEKENDEDLTTREDEEPSGGYEFENGMEFFVEVPIKEEMDFMEMINNNSP* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2667 399 CDD SANT 224 266 IPR001005 -
Tpr6g2667 399 PANTHER MYB DOMAIN PROTEIN 100-RELATED 112 358 - -
Tpr6g2667 399 CDD SANT 274 315 IPR001005 -
Tpr6g2667 399 Gene3D - 212 272 - -
Tpr6g2667 399 SUPERFAMILY Homeodomain-like 245 323 IPR009057 -
Tpr6g2667 399 PANTHER MYB PROTEIN-RELATED 112 358 - -
Tpr6g2667 399 MobiDBLite consensus disorder prediction 349 372 - -
Tpr6g2667 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 267 321 IPR017930 -
Tpr6g2667 399 ProSiteProfiles Myb-like domain profile. 267 317 IPR001005 -
Tpr6g2667 399 SUPERFAMILY Homeodomain-like 212 258 IPR009057 -
Tpr6g2667 399 ProSiteProfiles Myb-like domain profile. 216 266 IPR001005 -
Tpr6g2667 399 Pfam Myb-like DNA-binding domain 224 280 - -
Tpr6g2667 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 216 266 IPR017930 -
Tpr6g2667 399 MobiDBLite consensus disorder prediction 173 216 - -
Tpr6g2667 399 Gene3D - 273 318 - -
Tpr6g2667 399 SMART sant 220 268 IPR001005 -
Tpr6g2667 399 SMART sant 271 319 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2667 Tpr-Chr6 29321129 29324395 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2667 208 399 MYB Transcription Factor Family AT5G58850 40.191 3.64e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr6g2667 Myb_DNA-bind_6 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2667 K09422 - mtr:MTR_4g088015 405.986