Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2662 ATGGGAAGACAACCATGTTGTGATAAGGTTGGTTTAAAGAGAGGACCATGGACTATTGAAGAAGATCATAAGCTTATGAGTTTTATCCTTAATAATGGTATTCATTGTTGGAGAATGGTTCCTAAACTTGCAGGTCTTCTAAGATGTGGAAAAAGTTGTAGGTTGAGATGGATTAATTATTTGAGGCCAGACCTTAAGAGAGGCGATTTTACTGAAATGGAAGAGGATCAAATTATACAACTACATGCATGTCTTGGTAACAGGTGGTCAAAGATTGCTTCGCATTTTTCAGGAAGAACGGACAATGAAATTAAGAATCATTGGAACACAAGAATCAAGAAGAAGCTTAAGTTCCTTGGTCTAGATCCTGTGAACCACAAGCCAATTGAACAAAAGCAACAAACTGATGATGATGAAAAAGACAAAACTAACCAACAACTAAATATTCCACAAGAGGTTGAAGAAAATGTAGAGAATATTAAATCCTTGGAGAATGATGTCACAAAAGAAATGACGAAAACAGAATGGAAAAAAGAAGAAAACAAAGTAACTTGGGATGATAGTGATGAACTTTTAAACAATTTTGAAATTCTATGTTCAAATTTGGATTTAGGGACATGGATGAATCAAGGCACCAACACTACTACAAATTCTGTTTCTAGTTCCTCTATCTCTTTTGATGATACTAGCCACATTTCTATTGATGAGTCCTCTTACCTTCAACAAAATTCCTTACAACATTGGGTTGATAGTATGGATTCACTTCTCTCATGGGATGGCTTCAATCCTCTTGATCAAAATATTTCATTTTTTGGAAAATAG 822 0.3467 MGRQPCCDKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGDFTEMEEDQIIQLHACLGNRWSKIASHFSGRTDNEIKNHWNTRIKKKLKFLGLDPVNHKPIEQKQQTDDDEKDKTNQQLNIPQEVEENVENIKSLENDVTKEMTKTEWKKEENKVTWDDSDELLNNFEILCSNLDLGTWMNQGTNTTTNSVSSSSISFDDTSHISIDESSYLQQNSLQHWVDSMDSLLSWDGFNPLDQNISFFGK* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2662 273 PANTHER MYB DOMAIN PROTEIN 40 2 250 - -
Tpr6g2662 273 MobiDBLite consensus disorder prediction 127 147 - -
Tpr6g2662 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr6g2662 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr6g2662 273 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr6g2662 273 Gene3D - 11 67 - -
Tpr6g2662 273 CDD SANT 16 61 IPR001005 -
Tpr6g2662 273 CDD SANT 70 110 IPR001005 -
Tpr6g2662 273 Gene3D - 68 149 - -
Tpr6g2662 273 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 250 - -
Tpr6g2662 273 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr6g2662 273 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tpr6g2662 273 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr6g2662 273 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Tpr6g2662 273 SMART sant 13 63 IPR001005 -
Tpr6g2662 273 SMART sant 66 114 IPR001005 -
Tpr6g2662 273 MobiDBLite consensus disorder prediction 129 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2662 Tpr-Chr6 29291013 29292602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2662 1 167 MYB Transcription Factor Family AT1G66230 62.428 1.42e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr6g2662 Myb_DNA-binding 7.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2662 K09422 - gmx:100783231 407.912