Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2653 ATGGTGGAAAGTGAAGAACAAAATCGAAGTCCAGTGATCCGAAAGAAAACGTCGATGGGATCGAATAGCCAAAATGTGATCTCACTTATCAGTCCAAGATTCAAATCTGCTGCTGCTATGGCTGGTTGGGATGAAGAAGCACTTTTACTTGCAACTCTCATTGTTGAAGATACACCTGATAGAGATTCAAAACAGAAGAGGCGTTTTGTTTTGAATTCTAAATCTCCACTCTCCAATTCATCAAGGAAACGCAGAGCTCAGAGGAATCCTCCACAACCAATTATTCTTGATCTCGATGATGAAGAAACTCCCCAAAAGGATGTTGGTAAAAAGAAGAAAGAAAAGAAAATCTGTGTTACTGAAGAAAGTAAAGTTAAAGAAAAGGAATTGACTCAAAAGGGTATTGATGTCAATTCAACTAGTTCTTCTCTTCCTTGTATGGATAAGCTGAGAGAAGAGCTTTCATGTGCTATTTGTTTAGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTTTGTAGAAAATGTCTGAGATCTGCTGCAGATAAGTGTGGCAAAAAGTGTCCTAAGTGTAGGCAATTGATAAGCAATGGACGATCGTGCACCGTGAACACGGTTCTTTGGAACACAATTCAACTGCTATTTCCTCAAGAAATTGAAGCAAGGAAAGCAGCTGCTGTCACTGAGAATAATAGACAAGCACCAGCGCAGAATCCAATTCCCGAAACAACATTTTACAATAACCAAAGGAATAGAGGTATACAACCATATCCATCAAGTAGGGCTATGAGTTCGAGGAGATATGAAACACCGACAGAGACTGATGAGGATGCTGCATTGGCTAGATTGTTACAAAGAGAAATTGATGGACTGAGCAATCAAAGGGCAATGGCAACAACAAGGGTTTCAAGTGTAAGAGGAAGGACAAGAAGAGGGGTTTCGGCACAAGATGAAGATGCTGCTTTTGCTCTAAGGTTGCAAAGAGAGGAGTTTATGCATGCTTTTAGGGGGAGTAGCAACAACCAGGAGCAATCATCTTCTTCGTCCTCATCATTAGCTAGATCAAATTTGAGGGCAATGGCAACTAGAGCGATGAATATTCGTATTAGAGATCAAAGGATGTAA 1134 0.4056 MVESEEQNRSPVIRKKTSMGSNSQNVISLISPRFKSAAAMAGWDEEALLLATLIVEDTPDRDSKQKRRFVLNSKSPLSNSSRKRRAQRNPPQPIILDLDDEETPQKDVGKKKKEKKICVTEESKVKEKELTQKGIDVNSTSSSLPCMDKLREELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEIEARKAAAVTENNRQAPAQNPIPETTFYNNQRNRGIQPYPSSRAMSSRRYETPTETDEDAALARLLQREIDGLSNQRAMATTRVSSVRGRTRRGVSAQDEDAAFALRLQREEFMHAFRGSSNNQEQSSSSSSSLARSNLRAMATRAMNIRIRDQRM* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2653 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 225 IPR013083 -
Tpr6g2653 377 MobiDBLite consensus disorder prediction 1 25 - -
Tpr6g2653 377 ProSiteProfiles Zinc finger RING-type profile. 156 195 IPR001841 -
Tpr6g2653 377 MobiDBLite consensus disorder prediction 70 87 - -
Tpr6g2653 377 SMART ring_2 156 194 IPR001841 -
Tpr6g2653 377 MobiDBLite consensus disorder prediction 251 278 - -
Tpr6g2653 377 ProSitePatterns Zinc finger RING-type signature. 171 180 IPR017907 -
Tpr6g2653 377 MobiDBLite consensus disorder prediction 251 270 - -
Tpr6g2653 377 MobiDBLite consensus disorder prediction 99 113 - -
Tpr6g2653 377 PANTHER - 303 374 - -
Tpr6g2653 377 PANTHER - 19 243 - -
Tpr6g2653 377 MobiDBLite consensus disorder prediction 339 377 - -
Tpr6g2653 377 Pfam Zinc finger, C3HC4 type (RING finger) 156 194 IPR018957 GO:0046872
Tpr6g2653 377 MobiDBLite consensus disorder prediction 339 360 - -
Tpr6g2653 377 MobiDBLite consensus disorder prediction 61 113 - -
Tpr6g2653 377 PANTHER UNCHARACTERIZED 303 374 - -
Tpr6g2653 377 PANTHER UNCHARACTERIZED 19 243 - -
Tpr6g2653 377 SUPERFAMILY RING/U-box 148 219 - -
Tpr6g2653 377 Coils Coil 284 304 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2653 119 198 C2H2 Transcription Factor Family AT5G39550 34.568 4.87e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2653 - - gmx:102666585 417.927