Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2646 ATGGACAAAAAAGAGTGCAATTCTTCTCATCAAGATCCTGATGTACGAAAAGGACCATGGACTATGGAAGAAGACATGATCTTGATCAATTATATTGCAAATCATGGTGAAGGTGTTTGGAACTCCTTGGCAAAATCTGCTGGTCTTAAACGTACCGGAAAGAGTTGTAGACTCCGTTGGCTAAACTATCTTCGACCGGATGTTAGACGAGGAAATATTACACCCGAGGAACAACTCTTAATCATTGAACTTCATGCAAAGTGGGGAAACAGGTGGTCCAAAATCGCGAAACATCTACCGGGGCGAACCGATAATGAGATAAAGAATTATTGGAGGACTAGGATTCAGAAACATATCAAGCAAGCTGAGAATTCACAACAACAAAGTTCTTCTGATATTCAAATAAATGATAATGATAATCAAATAGGAAGCACTAGTCAAATTTCAGCCATGCCCGAGCCAATGGACATAAATATTATCTCACCACCCTCTTACCAAGGAATGTTGGAACCATTTCCAAATCAATTTCCTACAATTTCTGATCAATCAAGCTGTTGTACCAATGACAATAACTATTGGAGCATGGAAGATCTCTTGTCATTGCAATTACTAAATGGAGATTAA 624 0.3846 MDKKECNSSHQDPDVRKGPWTMEEDMILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIIELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQAENSQQQSSSDIQINDNDNQIGSTSQISAMPEPMDINIISPPSYQGMLEPFPNQFPTISDQSSCCTNDNNYWSMEDLLSLQLLNGD* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2646 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Tpr6g2646 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Tpr6g2646 207 Gene3D - 74 142 - -
Tpr6g2646 207 CDD SANT 74 113 IPR001005 -
Tpr6g2646 207 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Tpr6g2646 207 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Tpr6g2646 207 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 1 204 - -
Tpr6g2646 207 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Tpr6g2646 207 Gene3D - 17 69 - -
Tpr6g2646 207 CDD SANT 19 64 IPR001005 -
Tpr6g2646 207 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Tpr6g2646 207 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Tpr6g2646 207 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 204 IPR044676 GO:0003700|GO:0006355|GO:0043565
Tpr6g2646 207 SMART sant 69 117 IPR001005 -
Tpr6g2646 207 SMART sant 16 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2646 Tpr-Chr6 29003167 29009894 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2646 11 207 MYB Transcription Factor Family AT3G01530 57.360 8.59e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr6g2646 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2646 K09422 - gmx:778048 332.798