Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2641 ATGTATAGATTAATATCCACGCCGGCATCAACATTCGCCCAATTCCGGCGACTCCGCTCCAGACCTAAAATCACCGCCGCAAGTCTCGAAGAGAAATACGCTTCACGTATCTTACTATGGCGGTACCAGATCCTGGACCCAGACAGCGAATTCGTCGCGTATTGGAACAAAGTCTTTCTTGTCACAAGTCTCCTCGCATTGTTCATAGACCCTCTTTACTTCTTCCTCCCAACCGTTGGAGGACCCGCTTGTTTAACGGCAGACCCCAAAATCAGCATCTTACTCACCGTTCTTCGATCATTTGCGGATCTTTTTTATCTTCTTCATATGGTTATGAAGTTTCGTACTGCATTTGTTGCTCCTAATTCCAGAATTGTCGGTCGCGGTGAGCTTGTTATGGATTCTTGGGAAATTGCTTTGCGGTATTTGAAGTCTGATTTTCTTATTGATCTTGCTGCTACCGTTCCATTGCCTCAGATCGTTGTCTGGTTAGTGATTCCAGCGAGTAGAGGCACAAAAAGTGATCATGCCAACAACACTCTTGCACTTCTTGTTCTTATTCAGTATGTTCCTAGGCTCTTTCTCATCTTTCCTTTGAACCAGCGTATTCAAAAAACAACTGGTGTTATAGCCAAGACTCCCTGGATCGGTGCTGCATACAATCTTGTTCTCTACATGCTAGCTAGCCATGTTACAGGAGCAACTTGGTATCTATCATCAATTGGAAGACAATACAATTGCTGGAAAACACAATGCGATAATGAAAATCGATCGCATACCCTTTCTTGCTTGCCAAGTTTTCTTGATTGTAATAGTTTGGAACTCCCTGAGAGACAATACTGGCTAAATATCACACGAGTTGTTACGAAGTGTGATGCAAAGAGTAAGATTAACATCAAATACAAGTTTGGAATGTTTGCAGATGCTTTCCTCAATGATGTTGTCACTACTAGTTTTAAGGAAAGATACTTCTATTGTCTTTGGTGGGGTTTAAGAAATTTAAGTTCTTATGGGCAAAATCTGGACACCACCACATACCTTTTAGAGACACTTTTCTGCATTGTCTTATGCATTGCTGGATTAGTTCTTTTTTCACTTTTGATTGGAAATATGCAGACATACTTGCAATCGATGACAGTTAGACTAGACGAATGGAGGATTCGGAAAAGAGATACAGAGGAGTGGATGAGGCATCGACAGTTACCTCCAGATTTGCAAGAGCGTATCCGTCGCTTCGTTCAATATAAATGGCTAGCTACAAGAGGAGTAGATGAAGAGTCCATACTGCTTTCCTTACCTTTGGATCTACGCCGCGAAATTCAACATCACTTGTGTCTCTCTCTAGTGCGACGTGTGCCATTTTTCTCACAAATGGATGATCAACTACTTGATGCAATATGTGAACGTCTTGTATCATCATTGAGTACACAAGGCACATATATATTTCAAGAAGATGATCCAGTAGATGAAATGCTGTTTATCATTAGAGGTACATTAGAGAGTTCTACAACCAATGGAGGAAGGTATGGATTCTTCAATTCAATCACACTAAGGCCAGGAGACTTTTGTGGAGAAGAATTGTTAACATGGGCTTTATTACCAAACTCAACCCTCAATTTACCTTCCTCTACTCGTACCGTAAGAGCTCTTACAGAAGTAGAAGCTTTTGCGCTACAAGCAGAGGATCTAAAATTCGTGGCGAGTCAGTTCAAGAGGCTTCACAGCAAGAAACTTCAGCATGCTTTTAGGTATTATTCACAGCAATGGAGAACATGGAGTTCTTGTTTCATACAAGCAGCATGGAGAAAGCATCAGAAAAGGAAGGCCGCGAGGGAATTGGCAATTAAAGAGGGAATTTACTTCATGGAGGATCCTGAGATTGAGGAATCATCAGGCAATGGTAAAAAAGTTAAAAATCTTGGTGCTACTGTTTTGGCTTCAAGATTTGCTGCAAATACAAAGAAAGGGAAGATTCAAGATAGTGATCCTGTGCCGCAGTTGTTTAAACCTGATGAACCTGATTTCTCTCATGGTGGTGTTTAG 2043 0.4131 MYRLISTPASTFAQFRRLRSRPKITAASLEEKYASRILLWRYQILDPDSEFVAYWNKVFLVTSLLALFIDPLYFFLPTVGGPACLTADPKISILLTVLRSFADLFYLLHMVMKFRTAFVAPNSRIVGRGELVMDSWEIALRYLKSDFLIDLAATVPLPQIVVWLVIPASRGTKSDHANNTLALLVLIQYVPRLFLIFPLNQRIQKTTGVIAKTPWIGAAYNLVLYMLASHVTGATWYLSSIGRQYNCWKTQCDNENRSHTLSCLPSFLDCNSLELPERQYWLNITRVVTKCDAKSKINIKYKFGMFADAFLNDVVTTSFKERYFYCLWWGLRNLSSYGQNLDTTTYLLETLFCIVLCIAGLVLFSLLIGNMQTYLQSMTVRLDEWRIRKRDTEEWMRHRQLPPDLQERIRRFVQYKWLATRGVDEESILLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIFQEDDPVDEMLFIIRGTLESSTTNGGRYGFFNSITLRPGDFCGEELLTWALLPNSTLNLPSSTRTVRALTEVEAFALQAEDLKFVASQFKRLHSKKLQHAFRYYSQQWRTWSSCFIQAAWRKHQKRKAARELAIKEGIYFMEDPEIEESSGNGKKVKNLGATVLASRFAANTKKGKIQDSDPVPQLFKPDEPDFSHGGV* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2641 680 Gene3D Jelly Rolls 452 572 IPR014710 -
Tpr6g2641 680 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 33 677 - -
Tpr6g2641 680 ProSiteProfiles cAMP/cGMP binding motif profile. 454 584 IPR000595 -
Tpr6g2641 680 Gene3D - 59 379 - -
Tpr6g2641 680 Pfam Cyclic nucleotide-binding domain 477 565 IPR000595 -
Tpr6g2641 680 Pfam Ion transport protein 54 381 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tpr6g2641 680 CDD CAP_ED 454 585 IPR000595 -
Tpr6g2641 680 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 33 677 - -
Tpr6g2641 680 SUPERFAMILY cAMP-binding domain-like 385 579 IPR018490 -
Tpr6g2641 680 Gene3D Helix hairpin bin 382 445 - -
Tpr6g2641 680 SUPERFAMILY Voltage-gated potassium channels 46 376 - -
Tpr6g2641 680 SMART cnmp_10 454 585 IPR000595 -
Tpr6g2641 680 MobiDBLite consensus disorder prediction 654 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2641 Tpr-Chr6 28884758 28889577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2641 25 676 Ion Channels AT5G14870 67.889 0.0 968
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2641 K05391 - gmx:100802812 1188.33