Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2637 ATGGAATTTGATCCCAGTTTTGCTGAAAATTTTCCTAAAAATCCTTGCGTAAAACCAGAGATCCCCACAATGGTTTCCATGAAACCAAGTTTAACTATTTCTCCTTCACCATCACATTCCACCACCTTTTTATACAAAAATAATTGCAATCAATTTAAGGAACATCGTCTGAATGGAGCAAACCATCACTCTAGTTTTGCTAAGATGGTTCCTTCCTACATCAACCCATTTTCTATGATTCCAACTCCTTCGTTCAATGCCGTAGACGACATTGGATCCCGAAGAGAAATTTTCAATGGTCAAAATCCAATGACTTTTGCACCAAACAATAACAAAATGGAAGTCATGCATGGTCGCCTTAACACTGGCAAAGGAATTTTGGATTCGTCCAAAAACATTCTCTTTCAATATGGTGTAACTTCAGAATCTCGATTTAAGTCTAAGCTTCAAGGCGATTTCTCTGGAATTGGTGGAACTGGAAACAACTCCCGAGATGGTGATCGAGAATTTGTTCTTAGTGAGCAGAAGCGACAAAAGAGGAATCAAAATAATAGTGAAATTCAACCCAGATCAGATCTCAATATAATCAAAGGCCAATGGACTGCGAACGAGGATAGGAATCTTGTCCAATTGGTGGATCACTTTGGGCTTAGAAGATGGTCCAAAATTGCTAAGCATCTGAAAGGAAGGATTGGGAAACAGTGCAGGGAGAGATGGAATAACCATCTTCGACCGGACATTAAGAAAGAGTCATGGAGCGAAGAGGAGGACAAAGTACTGATTGAAGTTCACAAGATAGTCGGGAACAAATGGGCTGAAATCGCAAAGAGCTTGCCTGGTCGCACCGAGAACTCTATCAAGAACCACTGGAACGCCACTAAGCGCAGCCTGAACGCCAAGAAGAGGCCGAATAGGCGGAATAGTTTGAAGGGAACACTACTTCAGAAATACATATGCCAAGTCACTGCCGTTGAGGAAGCTGAAAAGGATCTGATGATGAAGAATCCCATGAACATGATGAATATTGAGAATCAACAAAATTTCGAAAGTTCAGAGAGTGATTACATTTCTGAAGGTTTGGCTACTCCAGAGGATGAAATTGAACACTATGTTCCAATGATGTTCAATGGTACTGCTGATTATGGAATGGCAAGTGGTTCTGGTTCTGGTTCTGGCACTGCAATGAATTATGATTTTGGATCATATGGAATGGCAAGTGGTTCTGGGACTGCAATGAATTATGAGTTTTATCCTGAGGTTCCTATGAAGCAGGAACTTGATCTCATGGAGATGATCTACAGAAACAACCCTTGA 1314 0.4087 MEFDPSFAENFPKNPCVKPEIPTMVSMKPSLTISPSPSHSTTFLYKNNCNQFKEHRLNGANHHSSFAKMVPSYINPFSMIPTPSFNAVDDIGSRREIFNGQNPMTFAPNNNKMEVMHGRLNTGKGILDSSKNILFQYGVTSESRFKSKLQGDFSGIGGTGNNSRDGDREFVLSEQKRQKRNQNNSEIQPRSDLNIIKGQWTANEDRNLVQLVDHFGLRRWSKIAKHLKGRIGKQCRERWNNHLRPDIKKESWSEEEDKVLIEVHKIVGNKWAEIAKSLPGRTENSIKNHWNATKRSLNAKKRPNRRNSLKGTLLQKYICQVTAVEEAEKDLMMKNPMNMMNIENQQNFESSESDYISEGLATPEDEIEHYVPMMFNGTADYGMASGSGSGSGTAMNYDFGSYGMASGSGTAMNYEFYPEVPMKQELDLMEMIYRNNP* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2637 437 SMART sant 196 245 IPR001005 -
Tpr6g2637 437 SMART sant 248 296 IPR001005 -
Tpr6g2637 437 PANTHER MYB DOMAIN PROTEIN 100-RELATED 132 343 - -
Tpr6g2637 437 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 248 298 IPR017930 -
Tpr6g2637 437 CDD SANT 251 294 IPR001005 -
Tpr6g2637 437 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 192 247 IPR017930 -
Tpr6g2637 437 Gene3D - 196 248 - -
Tpr6g2637 437 SUPERFAMILY Homeodomain-like 194 290 IPR009057 -
Tpr6g2637 437 CDD SANT 200 243 IPR001005 -
Tpr6g2637 437 Gene3D - 250 313 - -
Tpr6g2637 437 Pfam Myb-like DNA-binding domain 200 258 - -
Tpr6g2637 437 ProSiteProfiles Myb-like domain profile. 244 294 IPR001005 -
Tpr6g2637 437 ProSiteProfiles Myb-like domain profile. 192 243 IPR001005 -
Tpr6g2637 437 PANTHER MYB PROTEIN-RELATED 132 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2637 Tpr-Chr6 28842493 28845262 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2637 195 318 MYB Transcription Factor Family AT4G18770 71.774 2.77e-56 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr6g2637 Myb_DNA-bind_6 2.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2637 K09422 - mtr:MTR_4g088015 507.679