Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2634 ATGCCTCCAAAGAAGAAACCTAACACTTCTTCTTCATCTTCTAAGAAACCCATTCTACAACCTTCCAAATACGGTATTCAACACTTCTTCGATCGTCACGCAACTCAACAACAATCTCAGAAACTTCAATCTAACAATTCAACCTCTCAGGTTGTTGCTTCCGATTCTCTTCCACCACCGCCGGAAAAACCTAAAGACGCCGATGTTCCGTCGGGTGCAACTTCGCAGGGTGGTACACCGAATGATTCAGTGTTACCGGTGGTTACTGATGATACAGATAACCCATCTGAAGTGTCTCCTGAGATTTCCAAGTCTATGTCTCGCAAAAGATTCAAATTCTCACCTGGAATGTTTATCAAGCAAAGTCAGGATGATGGGGCTGATGAGGTTACATGGAAGATATCTCCAGTGAATGAAAGGCTTCAAGCAGTTTCAAAACACAAGCCTAAGATAATTCAAGCATTGGCTGATTCTTCGAGGGCCAACATGTTGCAAATTTGCCACTGCTCAGAAGATAAGACTTCTCTGGACAAAGGTGCCAAGGTTGAAGAGTTGCTTATAAAACCAACTCCCAGTGCATCTGCAAAAGCTCCGTTGTCATTGAGTAAATTGGGCTTGAAAAAATTAAACCCTGACCGAGATGTTGATTTTAATGGCAATCCAACTACTTTGAGCAACTCTTCAGTGTTTGGTGGAAGAAATCCCTTCAGAACTCCACCATCTTTGTCTTGTCGTGTAGATAAGCTTGCCAAGGACGCTGAGCAGAATGGACCATCTGACCAGCCTTTTTTGAGGCAGCACAAAAAGGCGTTGCTTGAACTTTTAGATCAAGTTGAAGATGCAATTGGTGTTGATAATGATACAGTTTGTTATAAAACCACCCATTCCCTTAAATCGCAAGATGACATTGCTAACGAGCTCCCTGTCAAAGTCAACCATCTAGTTGAAAGGACAAAATCTCAAATACCTAAAGATGTTGGTGTTTTCTCTGATTCCAGTTACTTGGTTTTGGAGGTATCTGAAAAATTGCAACCGGCTGCAGAAGGCCCATACAAGGTGCTTCGTTTACTGAATGAACAAACTGGAGAAGAGCGAGCTGTAAATTTGTGGGATGAATGGTCTTACAGTGTAATTGCCCCTGGAGATACTGTGAATGTAATTGGTCAATTTGATGAAGGGGGAAATTGTGATATTAATCATGATAATAATTTTTTGATTGTACACCCAGATATTCTTGTGTCTGGAACACGGGTTGCTGCCAGTTTTAGTTGCCCAAGGAGAACTGTCTTAGATGAGAGACTAAAGTCCAATGAGCACTCAACTGTAGCTTTATGTGGAACCTTGCTTCATCAAATTTTTCAGGCTGGGCTTACAAATGACAATCCTACAATAGACTTCTTAGAATGTTACACAGAAGTGGTTTTACAGAGAAATGTTGAAAGTTTATTTGCATGTGGAGTAAATGAAAAGGATGTTCGTAAAACCATGATTGATGCTATCCCTAGAATATACAGTTGGATTATGCTGTTCAGAAATATGGAGGAAAGAGAAGACCCTAACGTTAATTTTGGATCTGTTAATGGAATGAAGAACGTTGGCATATCTGAGGTAATTGATATTGAAGAAATGGCATGGGCACCAAAATATGGTTTGAAAGGAATGATTGATGCTTCCGTTAGAGTGAAGGTTCAATCTAGAAAAGATAAACCAGAAGAGAAGATCATGCCACTAGAGTTTAAAACTGGAAAATCACCTAGTAGCCAGACATCAGTAGAACATAATGCCCAAGTAATTTTGTACACTCTCCTGATGTCTGAAAGGTACCAGAAGAGCATTGATTCTGGTCTTTTGTATTATCTCCAAACAGATCAGACACAGGGCATTACGGTTCAAAGATCTGACATAGTTGGGTTGATAATACGTCGTAATGAGCTAGCAAGTGATATTTTGAAGGCATTAGTATTGCAACAACTTCCACCAGTGTTACAGAGTCCTAGCATGTGCAGAGGCTGTCGCCATCTAAATGTCTGTAGCATTTATAATAAGGCACATGGTGGAACGATCGAGAGCAATGAATTGAGAGATGTTTTCAGTTCCAATACTAATCACTTGACATCATCTCATTCTAAGTTCCTCTGCCATTGGGATCATTTGATTGACTTAGAAGCTAAAGGGACTGAGTTTACAAAGAAAGACGTGTGGCGATCATATAATTTGGGGACTCGCAGTGCCGGTGGTGTTTCTTCTATTGTTATTGATGCTTCACAAGGAATACCATATTCAAAATCTCATGAAAATAATAGTTTTGTTTATCGTTTTGTACCACAAGATACTTCTTGCCCCTCTATAGTTTCTGATGATGATCCTTCTAGTGCTTCTTTGAAAAATGATTTAGATCTCACACTGAGAAATGGTGACTATGTGATATTGAGTAATGAATCAAGCCATCAAACTATTGCAAAAGGGGTGATTTCAGATATTAGTCAGAATCATATATCTGTTTCCTTTTCCAAGCTCTTGAGAATTCCTGGGAGGTCTTCCATGGAACATGATCTCCTTCAGCAGGTTTGGAGAATCGACAAGGATGAAGCTGTGACTTCGTTTGCAATTATGAGGTTTAATCTTGTACAACTTTTTCTACAAAATGATCAAAGTGCTCATCTCCGGAGGATGATTGTTGACCTTGAGGCTCCTAGATTTGACAGTGGTTCTATAGTTAGTCAGGATCCTGCAATATCTTACGTTTGGTCTGAGCAGAGTTTGAATGATGATCAACGTAAAGCGATTCTCAAGATACTTGTAGCAAAAGATTATGCACTTATATTAGGGATGCCTGGAACGGGGAAGACATCCACCATGGTCCATGCTGTGAAAGCCTTGTTGATTAGAGGCACATCCATTTTACTAACAGCATATACAAATTCTGCTGTTGATAATTTACTCATCAAATTAAAAGCACAGGGCATTGATTTTGTACGTGTTGGAAGACATGGAGTAGTGAATGAAGAGGTCAGAGGGCACTGCCTTTCAGAAAATAACGTACAGACTGTTGAAGATATCAAAATAAGGTTTGAACAAGTCAAAGTTGTTGCAGTTACTTGTTTGGGAATTTCTAGTCCCCTGCTTGCCGACAAGAGATTTGATGTGTGCATTATGGATGAAGCCGGACAGACTACTCTGCCGGTGTCCTTGGGCCCTCTAAGATTTGCTTCGACGTTTGTTCTTGTGGGGGATCATTATCAACTGCCGCCACTTGTCCATAGTACAGAGGCCCGAGAAAATGGCATGGGGATGAGTTTGTTTTGTAGGCTTTCAGAAGCCCATCCACAGGCGATTTCAGCTTTACAGAGTCAGTACCGTATGTGTCAGGGTATTATGGACTTGTCAAATGCCTTGATATATGGTGACAGATTGAGGTGTGGTTCATCTGAGATAGCTAATGCCAAACTTGAGTTTTCTGGCTTAAACTGCAGTTTGCCTTGGCTAGAAGATGTTTTGAATCCTGGAAGACCAGTGATATTTATTGATACTGATATGTTGCCTGCCTTAGAGGAAAGAGATCAGAAAATTGTAAATAACCCTATCGAAGCTCACATAATTGCTGAGGTTGCAAAGGAATTGGTAAAAAATGGAATTGAAGGAGAGCACATTGGCATTATTACTCCCTATAATTCACAAGCAAACCTCATCCGCCAAGCTACTAGCATAACGTCCTTGGAGATACATACCATTGATAAATACCAGGGTAGAGATAAAGACTGTATATTAGTATCTTTTGTACGGTCTTGTGAGAACCCAACAAGCTGTGTGGCTTCTCTACTTGGAGACTGGCACAGGATAAATGTGGCTCTTACTCGTGCTAAGAGAAAGTTGATCATGGTGGGGTCTCGTAAAACTCTATTGAAGGTTCCACTACTGAAGCTTCTCATTAAGAAAGTTGAAGAGCAATTTGGAATTTTAAGTGTGTCTAAGAAGGATATCTATAGAAATGGTGAACTCATTAGATGTTCTCAAATTGCTTCTTCAAAACAAAAATTAGATGTTCCAAAATGA 4053 0.4007 MPPKKKPNTSSSSSKKPILQPSKYGIQHFFDRHATQQQSQKLQSNNSTSQVVASDSLPPPPEKPKDADVPSGATSQGGTPNDSVLPVVTDDTDNPSEVSPEISKSMSRKRFKFSPGMFIKQSQDDGADEVTWKISPVNERLQAVSKHKPKIIQALADSSRANMLQICHCSEDKTSLDKGAKVEELLIKPTPSASAKAPLSLSKLGLKKLNPDRDVDFNGNPTTLSNSSVFGGRNPFRTPPSLSCRVDKLAKDAEQNGPSDQPFLRQHKKALLELLDQVEDAIGVDNDTVCYKTTHSLKSQDDIANELPVKVNHLVERTKSQIPKDVGVFSDSSYLVLEVSEKLQPAAEGPYKVLRLLNEQTGEERAVNLWDEWSYSVIAPGDTVNVIGQFDEGGNCDINHDNNFLIVHPDILVSGTRVAASFSCPRRTVLDERLKSNEHSTVALCGTLLHQIFQAGLTNDNPTIDFLECYTEVVLQRNVESLFACGVNEKDVRKTMIDAIPRIYSWIMLFRNMEEREDPNVNFGSVNGMKNVGISEVIDIEEMAWAPKYGLKGMIDASVRVKVQSRKDKPEEKIMPLEFKTGKSPSSQTSVEHNAQVILYTLLMSERYQKSIDSGLLYYLQTDQTQGITVQRSDIVGLIIRRNELASDILKALVLQQLPPVLQSPSMCRGCRHLNVCSIYNKAHGGTIESNELRDVFSSNTNHLTSSHSKFLCHWDHLIDLEAKGTEFTKKDVWRSYNLGTRSAGGVSSIVIDASQGIPYSKSHENNSFVYRFVPQDTSCPSIVSDDDPSSASLKNDLDLTLRNGDYVILSNESSHQTIAKGVISDISQNHISVSFSKLLRIPGRSSMEHDLLQQVWRIDKDEAVTSFAIMRFNLVQLFLQNDQSAHLRRMIVDLEAPRFDSGSIVSQDPAISYVWSEQSLNDDQRKAILKILVAKDYALILGMPGTGKTSTMVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRVGRHGVVNEEVRGHCLSENNVQTVEDIKIRFEQVKVVAVTCLGISSPLLADKRFDVCIMDEAGQTTLPVSLGPLRFASTFVLVGDHYQLPPLVHSTEARENGMGMSLFCRLSEAHPQAISALQSQYRMCQGIMDLSNALIYGDRLRCGSSEIANAKLEFSGLNCSLPWLEDVLNPGRPVIFIDTDMLPALEERDQKIVNNPIEAHIIAEVAKELVKNGIEGEHIGIITPYNSQANLIRQATSITSLEIHTIDKYQGRDKDCILVSFVRSCENPTSCVASLLGDWHRINVALTRAKRKLIMVGSRKTLLKVPLLKLLIKKVEEQFGILSVSKKDIYRNGELIRCSQIASSKQKLDVPK* 1351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2634 1350 CDD SF1_C_Upf1 1121 1297 IPR041679 -
Tpr6g2634 1350 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2-LIKE 71 1332 - -
Tpr6g2634 1350 Gene3D - 1021 1118 IPR027417 -
Tpr6g2634 1350 Gene3D - 846 1020 IPR027417 -
Tpr6g2634 1350 MobiDBLite consensus disorder prediction 1 107 - -
Tpr6g2634 1350 PANTHER DNA2/NAM7 HELICASE FAMILY 71 1332 IPR045055 -
Tpr6g2634 1350 Pfam AAA domain 1025 1088 IPR041677 GO:0004386
Tpr6g2634 1350 Pfam AAA domain 921 1012 IPR041677 GO:0004386
Tpr6g2634 1350 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 920 1306 IPR027417 -
Tpr6g2634 1350 MobiDBLite consensus disorder prediction 31 55 - -
Tpr6g2634 1350 Pfam AAA domain 1097 1297 IPR041679 -
Tpr6g2634 1350 CDD DEXXQc_DNA2 920 1120 - -
Tpr6g2634 1350 Gene3D - 1119 1326 IPR027417 -
Tpr6g2634 1350 Gene3D - 414 678 IPR011604 -
Tpr6g2634 1350 Pfam DNA replication factor Dna2 359 561 IPR014808 -
Tpr6g2634 1350 MobiDBLite consensus disorder prediction 72 102 - -
Tpr6g2634 1350 Pfam Domain of unknown function DUF83 569 678 IPR022765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2634 Tpr-Chr6 28807708 28822377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2634 1 1062 Core DNA Replication Machinery Family AT1G08840 54.270 0.0 1093
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2634 K10742 - gmx:100799415 1793.09