Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2628 ATGGGAGTTCACGGTCTCTGGGAACTACTCTCCCCCGTCGGTCGTCGAGTCTCCGTCGAAACCCTCGCCGGAAAAACACTCGCCATCGACGCGAGCATTTGGATGGTACAGTTTATCAAAGCGATGCGTGATGAAAAAGGTGAAATGGTTCGCAACGCTCATTTGCTTGGATTCTTCCGTCGCATTTGTAAGCTATTGTTTCTAAGGACTAAGCCTGTTTTCGTTTTTGACGGTGGAACCCCTGCTTTGAAGCGGCGTACTGTGATTACTCGCCGGAGACAGCGCGAAAATGCTCAGGCTAAAGTTCGCAAGACTGCCGAAAAATTGCTTCTTAATCAAGTAAAGGCATTGAGGTTAAAGGAACTGGCTGATGATATTAAGAACCAGAGACTGACCCAGAAGAGTGGCACAAAGTCTCAGAAAAAATCTAATAAGACGGACTTTGTTGGTAGTGATTTAGGAAGAAGTCACACGAAAGAGCTAGAACAAATGTCTGCAGCTATACCTGTGGCTAAGGAGGACAAAAATCTATCGCAGACTATAACATCGACAAGTTGCAATCAAGAGGAGCTTGATGAAATGCTGGCAGCATCTATAGCTGCAGAGGAAAATGGAATCCGGTCAAGAGAAGCAGTGGCATCTAATGTAATCGATTCTTCAGATGCAGGCGAAGAGATGATACTGCCAGCTATGCACAGTGAAGTTGATCCAGCTGTTCTGGCCTCTCTGCCTCCATCAATGCAACTGGACCTACTTGTTCAGATGAGAGAGCGATTGATGGCAGAGAACAGACAAAAGTATCAGAAAGTCAAGAAGGATCCTTCAAAGTTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCCGTCGCGAGATAAACGAAGTGCAGAAAGCTGCTGTCGGAGGAGGAATAGGTGGTGTACAGACTTCACGGATTGCATCTGAAGCCAACCGAGAGTATATTTTCTCGTCATCCTTCTCCGGTGACAAACAAGAACTTACTTCCACCAGATCAGAGAGAAATGTCGAAGATACACAGCAAATAGAACAAAGAACACATCCTTCACAAAATTTTGTAAATAACATAGCAGCAGGAAATGTTTCTAATACTTCAGCTGGATTGGTTTGCAATGAATCAAACGAGCCTGTTGATGAAAGTATTCAGACATTTCTAGATGAGAGGGGTCGATTTCGATTGAGTAGATCAAGAGCTATGGGGATGCGTATGACCCGCGATATACAAAGGAATTTGGATTTGATGAAGGAGATTGAGCATGACAGAACATGTGTGAACGAGGTTGATAACATTGAAAAAGTGCTGAATACTGAAAATAGTCCATTAGAATGTTCTGGGAATCAGGTTAGTGATAAAGCACAAGAGGTGAATTTTGACTTAGTTGGAGAGAATGTGCAAAATGAGAAATTAATGCTTGGCAAGGATACTTCTATAGAGATATCCTTTGAATATGATTGCAAGAATGAATTTGCAAATGGTGGAGATGATATATTTTCCACTTTAGTAGGAGGAATATCTATGGATCACTCTCATGCTGATGATACTGTGGTGAAAGTGCAACCTTCTGGTTCTGATTCAGATTGTGATTGGGAAGAAGGAACTGTTCAGGGTGAGAATACCATTTTTCCTGGATATAATAAAGTGGAATTGAAGTCTTCTGTTGCAGGTGGTGATGATGATGATAATAATAATAATGAAAGTGAAGAAGAATGGGAAGAAGGGGATTGTAATGCTACTAAAAGCACCTTACTGAGTCCAGCTGAGTCGGAAAAGTTGGTATCAAAAGGGCAACTGGAAGAGGAGTCTGATTTGCAGGAGGCAATTAGGAGAAGTCTTGAGAGTACACAGGATGGGAACCATAAATCCGTGTCATCTTTAGACAAGCATTCGAGTGCTTATGAGAATAAGCTGGATCCTAATTTAGAACATGGTGATAACGTTGGTTTTGGCCCAAACCCAGTGGATTTAAATGATAATAAGGAAGGTTCCAATTTTCCTAGGGAAGGCCATACCAAACAAAATGAATTACATGAAACTGTAGGAAACAAAAAGGAAAATCATGTGACTAAAAATAACCCGGAAACTTTCCATTTCCATGGAAGTCCGTCAAAGTCATTTGTGACAATTAATTCCAATAACACAGATACATTGATTAACGAACCTAGCAAACTGGCCGGACACGATATTACTGAAAATTCAATTTCAGCTGCAACTGTCATGGTGATGGGTGAAATTCCTAATCCTATTGTTGCAGAGGAGTTATTGGATAATCATAATGATGGTAAAGCATCTTTCGGTAGTAACAATTTGTCCAAGGTTGGTGTGACTGAAGGAAAGAAAAATAAATATATTAATGAATCTGAACCATTGAGTAATTCTACCGACAATACCAATACTGCTATTCTTTCTGTGGAGTCATCCTTAAAAGGAGCTAAAAAAGGCCTTGATATGGAGCTAAAATTGCCTTCAGTTAACAATGATGGAAATTTGTCTATGGAAAGGAGTAGTAACCTCTCCCAAGACTCAATGAACGCCCCAGGAGATTTTCCTGTACAATGGGATGAGGTTCGATTGAATGAAGAAATGAAAATTCTTGATCGGGAATATATCAGCCTAGAAAATGAGCAGAGGAAGTTTGAGCGTAATGCAGAATCCGTTCATGGTGAATTATTCACTGAATGTCAGGAACTACTTCAAATGTTTGGCTTGCCATATATTATTGCTCCTATGGAAGCTGAGGCACAGTGTGCTTACTTGGAACTCTCAAAACAGGTTGATGGTGTTGTGACTGATGACTCTGATGTCCTTTTATTTGGGGCACGCAGTGTTTACAAGAATATATTTGATGACCGCAAATACGTAGAGGCATACTTATTGGAGGACATTGAAAAGGAGCTTGGATTGACCAGGGAAAAATTAATTCGCATGGCACTACTTCTTGGGAGTGACTATACTGAAGGTGTAAGCGGGATTGGCATTGTTAATGCTATTGAGGTTATAAATGCATTCCCGGAGGAAGATGGCTTCCTGAAATTCCGGCAGTGGGTAGAGTCACCAGATGCCACCATCCTTGGAAAGTTGGATGCAAAAAATGTATCTAAGAAAGGGTCAAAACTTGAAGAAAAGGAGTCTCCTGATTCCATCGACAAAGGAAAGCAAATTTTCATGGATAAGCATAGAAAAGTTAGCAAGAATTGGCATATTCCTTCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTACTTATCTCCACAAGTTGACAAGTCAACTGAGCCTTTCACATGGGGAAAGCCAGATCAGCTTGTTCTTCGCAAAATGTGCTGGGAGAAATTTGGGTGGTCTAGCCAGAAAGCAGATGAATTGCTATTACCTGTTTTAAAGCAATACAACAAACGTGAGACTCAATTGCGGTTGGAGGCCTTTTACAGTTTCAATGAAAGATTTGCAAAAATTCGTAGCAAGAGAGTGAAGAAAGCAGTAAAAGGAATTACTGGTAAGCAGCCTTCAGATTTAATTGATGATTCTGCAGAGAACATGTCCAAGGGTATGAATGATGGTAGAGGAAGTTCTGTTGACCCTGAGGATGACAAATTGGAGACTTCGAAGGGAACGGAGGAAAGTTTTGCAGGTAGGAAGAAATCAAAAACAAAAGAGTCGACAAAAAGGAAAAATGACAGGGATACGGTTGCTAAAAAACATACAAAGAAAAAGAAAATCAATGATGCTTCTTCTTCTGCACCTGCTGCATCCGAGGTTGAGAATTTACAGCCATGTAAGGGATTGACTCGGAATAAAAGTGGCAGTGGGCGTGGAAGAGGTAAAGGTGTAGGAGTAAAAAGAGGCAGGGAGAAGAGAACTCGTTTTCAATCATCTGAAACTGAAACATCATCTGGCAGTAGTGATATTGAAATTCATGAGTCAAGAGTGCAAGTTGATGCGTCAACAGTTCCAGAGGTTGTGCGAAGGTCAAAGCGATCTCGGAAACCTGCCAACTATTCTTTCGAGGACCTTGAAGTTGAGGATGCAGTTGATTCATCTGAAAAGGTAGTAAAAGAAAAACCATCTTGCATGGATGATGCACATGTAGATGGTTTCAGCAGAGGGAATGAAAGTGGTACGATAGAAATTCCTCTGAAGGATAACTTGCCCACAGACTATCTGGAGCCAGAAACAGATGCTGGTGCAGCAACACCAATGACTCACCCTTCAGATGACTATCTTGGAATGGGAGGAGGATTCTGTGTAGACGACAGTGAGATGGATAACAACCATGATGCAATTGATGACATGAACACGGCTACTGCAAACTCTCCACCCTGTTCTGAATTTTTAGGTGAAACTGACCGTGATAAAAGTAGTCCTGATATATTTTCCAGTGCTGAAAAGGTTACAAGTGAGATACAAGATGGAGGGACATCTAAAATATTCAACAAAGTGCCAAATGACCAGGTTCTAAATGCTGATATAGGGGTCTTGATACCAGAGAATGCTCATCACAATAGTGAGAGCTCCAAGGTAGCTTTTAGCGCTATGCCGTTTTTGAGGAAAAAAAGGAAGAAATGA 4587 0.4103 MGVHGLWELLSPVGRRVSVETLAGKTLAIDASIWMVQFIKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVITRRRQRENAQAKVRKTAEKLLLNQVKALRLKELADDIKNQRLTQKSGTKSQKKSNKTDFVGSDLGRSHTKELEQMSAAIPVAKEDKNLSQTITSTSCNQEELDEMLAASIAAEENGIRSREAVASNVIDSSDAGEEMILPAMHSEVDPAVLASLPPSMQLDLLVQMRERLMAENRQKYQKVKKDPSKFSELQIQAYLKTVAFRREINEVQKAAVGGGIGGVQTSRIASEANREYIFSSSFSGDKQELTSTRSERNVEDTQQIEQRTHPSQNFVNNIAAGNVSNTSAGLVCNESNEPVDESIQTFLDERGRFRLSRSRAMGMRMTRDIQRNLDLMKEIEHDRTCVNEVDNIEKVLNTENSPLECSGNQVSDKAQEVNFDLVGENVQNEKLMLGKDTSIEISFEYDCKNEFANGGDDIFSTLVGGISMDHSHADDTVVKVQPSGSDSDCDWEEGTVQGENTIFPGYNKVELKSSVAGGDDDDNNNNESEEEWEEGDCNATKSTLLSPAESEKLVSKGQLEEESDLQEAIRRSLESTQDGNHKSVSSLDKHSSAYENKLDPNLEHGDNVGFGPNPVDLNDNKEGSNFPREGHTKQNELHETVGNKKENHVTKNNPETFHFHGSPSKSFVTINSNNTDTLINEPSKLAGHDITENSISAATVMVMGEIPNPIVAEELLDNHNDGKASFGSNNLSKVGVTEGKKNKYINESEPLSNSTDNTNTAILSVESSLKGAKKGLDMELKLPSVNNDGNLSMERSSNLSQDSMNAPGDFPVQWDEVRLNEEMKILDREYISLENEQRKFERNAESVHGELFTECQELLQMFGLPYIIAPMEAEAQCAYLELSKQVDGVVTDDSDVLLFGARSVYKNIFDDRKYVEAYLLEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVINAFPEEDGFLKFRQWVESPDATILGKLDAKNVSKKGSKLEEKESPDSIDKGKQIFMDKHRKVSKNWHIPSSFPSETVISAYLSPQVDKSTEPFTWGKPDQLVLRKMCWEKFGWSSQKADELLLPVLKQYNKRETQLRLEAFYSFNERFAKIRSKRVKKAVKGITGKQPSDLIDDSAENMSKGMNDGRGSSVDPEDDKLETSKGTEESFAGRKKSKTKESTKRKNDRDTVAKKHTKKKKINDASSSAPAASEVENLQPCKGLTRNKSGSGRGRGKGVGVKRGREKRTRFQSSETETSSGSSDIEIHESRVQVDASTVPEVVRRSKRSRKPANYSFEDLEVEDAVDSSEKVVKEKPSCMDDAHVDGFSRGNESGTIEIPLKDNLPTDYLEPETDAGAATPMTHPSDDYLGMGGGFCVDDSEMDNNHDAIDDMNTATANSPPCSEFLGETDRDKSSPDIFSSAEKVTSEIQDGGTSKIFNKVPNDQVLNADIGVLIPENAHHNSESSKVAFSAMPFLRKKRKK* 1529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2628 1528 Gene3D - 858 975 - -
Tpr6g2628 1528 SMART xpgineu 907 976 IPR006086 GO:0004518
Tpr6g2628 1528 CDD PIN_XPG_RAD2 893 1135 - -
Tpr6g2628 1528 MobiDBLite consensus disorder prediction 620 639 - -
Tpr6g2628 1528 SMART HhH_4 978 1011 IPR008918 GO:0003677|GO:0003824
Tpr6g2628 1528 SUPERFAMILY PIN domain-like 2 991 IPR029060 -
Tpr6g2628 1528 MobiDBLite consensus disorder prediction 1190 1342 - -
Tpr6g2628 1528 Pfam XPG I-region 910 991 IPR006086 GO:0004518
Tpr6g2628 1528 CDD H3TH_XPG 979 1096 - -
Tpr6g2628 1528 Gene3D - 976 1064 - -
Tpr6g2628 1528 Coils Coil 863 890 - -
Tpr6g2628 1528 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 1 1528 - -
Tpr6g2628 1528 MobiDBLite consensus disorder prediction 1326 1342 - -
Tpr6g2628 1528 ProSitePatterns XPG protein signature 2. 910 924 IPR019974 GO:0016788
Tpr6g2628 1528 MobiDBLite consensus disorder prediction 1196 1235 - -
Tpr6g2628 1528 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Tpr6g2628 1528 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Tpr6g2628 1528 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 976 1158 IPR036279 -
Tpr6g2628 1528 MobiDBLite consensus disorder prediction 561 613 - -
Tpr6g2628 1528 MobiDBLite consensus disorder prediction 131 151 - -
Tpr6g2628 1528 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Tpr6g2628 1528 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Tpr6g2628 1528 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Tpr6g2628 1528 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Tpr6g2628 1528 SMART xpgn3 1 98 IPR006085 GO:0004518
Tpr6g2628 1528 MobiDBLite consensus disorder prediction 131 155 - -
Tpr6g2628 1528 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Tpr6g2628 1528 Gene3D - 1 162 - -
Tpr6g2628 1528 MobiDBLite consensus disorder prediction 1249 1271 - -
Tpr6g2628 1528 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 1528 - -
Tpr6g2628 1528 MobiDBLite consensus disorder prediction 1368 1412 - -
Tpr6g2628 1528 CDD PIN_XPG_RAD2 2 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2628 Tpr-Chr6 28721730 28733288 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2628 901 1008 Core DNA Replication Machinery Family AT5G26680 38.739 1.92e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2628 K10846 - gmx:100820295 1525.76