Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2627 ATGGCAACTGAAATAAGCAGTACCATAAAAGCTTGGACTTACTCAGAATATGGCAACTCCGTTGATGTTCTAAAATTTGATCCAAACGTGGCCTTACCTGATGTGAAAGATGATCAAGTGCTTATCAAAGTCGCTGCTGCTTCCCTTAATCCCATTGATTATAAGAGAATGGCAGGCGGTTTCAAAGCCTCTGACTCTCCTTTACCAACTGCTCCAGGGTATGATGTAGCTGGAGTTGTGGTTAAGGTAGGGAGTGAAGTGAAGAAATTTAAGGTTGGCGATGAAGTTTATGGTGATATCAATCCCAATGCTTTGGAACATCCAAAGGTGATTGGTTCACTGGCAGAGTATACTGCTGCAGAAGAGACAGTGTTGGCTCACAAGCCGAAAAATCTCAGTTTTGCCGAAGCTGGTAGTCTTCCTTTAACAATTGAGACTGCTTATGTAGGCCTTGAACTAGCTGGCTTCTCTGCTGGTAAATCCATACTTGTGCTTGGTGGTGCTGGTGGAGTTGGAACCCATATCATTCAGCTTGCCAAGCATGTCTTTGGCGCTTCCAAGGTAGCAGCTACATCTAGCACCAAGAAACTAGAACTGTTGAGCAAGTTAGGAGCTGATTTACCTATCGATTACACAAAGGAGAACTTTGAAGACCTGCCTGAAAAGTTTGATGTGGTATATGACACAGTAGGCGAAACTGAGAAGGCATTCAAGGCTCTGAAAGAAGGCGGCAAAGTTGTGACAATTGTACCACCAGGATTTCCACCATCAATATTTTTCATACTCGCTTCTAATGGTGCTATCTTAGAGAAACTAAATCCTTACTTGGAGAGTGGAAAGGTGAAGCCAGTGCTTGACCCCAAGAGCCCATTTCCATTTTCTCAATCTGTTGAAGCATTTTCCTATCTGGAAACTGGTAGAGTTACTGGAAAAGTAGTTATTCATCCCATACCATGA 957 0.4305 MATEISSTIKAWTYSEYGNSVDVLKFDPNVALPDVKDDQVLIKVAAASLNPIDYKRMAGGFKASDSPLPTAPGYDVAGVVVKVGSEVKKFKVGDEVYGDINPNALEHPKVIGSLAEYTAAEETVLAHKPKNLSFAEAGSLPLTIETAYVGLELAGFSAGKSILVLGGAGGVGTHIIQLAKHVFGASKVAATSSTKKLELLSKLGADLPIDYTKENFEDLPEKFDVVYDTVGETEKAFKALKEGGKVVTIVPPGFPPSIFFILASNGAILEKLNPYLESGKVKPVLDPKSPFPFSQSVEAFSYLETGRVTGKVVIHPIP* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2627 318 Gene3D - 16 314 - -
Tpr6g2627 318 CDD MDR_like_2 10 314 - -
Tpr6g2627 318 SMART PKS_ER_names_mod 19 314 IPR020843 GO:0016491
Tpr6g2627 318 Gene3D - 151 265 - -
Tpr6g2627 318 SUPERFAMILY GroES-like 7 166 IPR011032 -
Tpr6g2627 318 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 132 258 IPR036291 -
Tpr6g2627 318 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 3 318 IPR044626 GO:0016628
Tpr6g2627 318 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 159 180 IPR002364 GO:0008270|GO:0016491
Tpr6g2627 318 PANTHER CYTOSOLIC ALKENAL/ONE OXIDOREDUCTASE 3 318 - -
Tpr6g2627 318 Pfam Alcohol dehydrogenase GroES-like domain 38 100 IPR013154 -
Tpr6g2627 318 Pfam Zinc-binding dehydrogenase 203 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2627 Tpr-Chr6 28717331 28720613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2627 69 255 Monolignol Biosynthesis Gene Families AT4G37980 25.455 2.04e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2627 K18980 - gmx:100817947 503.827