Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2618 ATGTCGACACTAATGCAAGAAATATCTAAATCACCATCTCGTGAAAGAGAAAACAAAGAATCTGAAATTTATGATGATAAGTTAGATTCAAATATTGTTTGCGAAGAAGAAGCACCTAGGACTGCAATGACATTTAGTTCTGAAGAGGAAGTTACCTTGTATTATATGAATTATGCTCGACATATGGGTTTTGGAATTAGTAAAATAAGTTCGAAAAATGGAGATGAAGGAAAAAAATATTTTACTTTAGCATGTAGTCGTGCAGGAAAGTATGTGAGCAATCCCAAGAATGTTTTGAAACCAAATCCTATCACTAAAACACAATGTAAGGCAAGACTGAATGCATGTATATGCTCGGATGGAACAGTTGTTGTTTCAAGTGTTATTCTTGAGCATAATCATGAACTTAGTCCAACCAAAGCACGGTATTTTAGATGCAACAAGAATTTGGGGTCTCATATAAAAAGGAGATTAGAACTTAATGACCAGGCAGGAATCAATGTGAGCAGAAATTTTAGGTCTCTGGTTGTTGAAGCAAACGGGTACGAGAATCTAACATTTGGAGAAAGAGATTGTCGAAATTATATAGATAAGGTAAGACGTCTACGACTTGGGACAGGAGACGCTGATGCAGTACAAAACTATTTTATTAGAATGCAAAAGCAAAATAATCAGTTTTATTATGTAATGGATTTCGATGATGAAAGTCGTTTGAGAAATGTATTCTGGGCAGATGCGAGAAGTAGGGCTGCATATGAATATTTTGGTGAAGCTGTAACCTTTGACACCACTTATTTAACAAACAGATATGACATGCCTTTTGCTCCTTTTGTTGGAGTAAATCATCACGGTCAATCTGTGTTGTTGGGTTGTGCGCTATTATCAAATGAGGATGCTAAAACTTTTACTTGGTTGTTTACAACGTGGCTAGAGTGCATGCATCAACGTGCACCAAATGCCATTATTACTGACCAGGATAAAGCAATGAAAAATGCAATTGAAATTGTCTTTCCAAAAGCTCATCATCGATGGTGTTTATGGCATATAATGAAAAAGATTCCAGAAAAGTTTGGCAGGCACACATATTATGAGTCTATTAAAACACTTTTGCATGATGTTGTTTATGATTCATTGAGTAAAAGTGTTTTCATGGAGAAATGGGAAAGAATGGTTGAATCTTATGAACTACATGATAATGAATGGTTGAAAGGGTTATTTGATGAGCGGCACCGTTGGGTTCCTGTGTATGTGAAGGACACATTTTGGGCCGGGATGTCAACCACACAAAGAAGTGAAAGCATGAACTCATTTTTTGATGGGTATGTAAACTCAAAGACATCACTGAAGCAATTTGTGGAGCAATATGACAATGCATTAAAAGATAAGATTGAAAAGGAAAGCACTGCTGATTTCAATTCATTTAATAAAGTAATTCCATGTTTAAGTCATTTTGGCTTTGAGTCTCAATTTCAAAAAGCATTTACTAATGCAAAATTTAAAGAATTTCAACTAGAGGTTCCTGCTATGATGTATTGCAATACTTTGTTTGAGAAATTGGATGGTGTGAATTCAATATTTAGTGTGATGGAAAATAAGAAAGTATATGACAAAATGAAAGACATCGAGTTCAAGGTGTCATTCAATGAGAAAGATTTTGAATTACAATGTACATGTTGCTTATTTGAGTTTAAAGGTATTTTGTGTAGACACATCCTTTGTGTGCTTCAATTGTCACGTAAAACAGAGTCAGTGCCGCCTTGTTATATGTTTTCACAGTGGAGGAAGGATATAAAGCGAAAACATACACTTATTAAATGTGGTTTTGATAACTTGACTGGAAATGCTGAATTCCAGCGTGTTGGTAAGGCTTGTGATGCCTTTTACGAAGTTGCTTCTACAGAGATAAAGACCGAAGAAGAATTATTAAAAGTTATGGATTGGATCAAGGACTTGAAAATAGAGTTAACTTGTAAAAAGTCATCTCCAAGAATTAGAGAAGAAGATGGTTCAATTCCAAATCAAGTGTCTAGCATTCTTGACCCTGTAGAGGCTCGAAGAAAAGGACGTCCTCGTGAAAAAAGAAAGGCTGCTAAAGTTGATCAAATTGTGAAGAAGAAACTTGCAAAAAAGAAAACTCAAACTAGCCAAAAGAGAAAAAATTCCCAAAGTCAAGAAGAGCATGAGCATAATGATCTTTTGAGTAGTGGAAATGGTGGTATAAATAGCTTAGCTCCATTTGATTCAACTCAAGAGCAGAATGGTGATGTATATCAGTGTGAGCAAAGGTATCTATGGAGGACTGAATATGGTACTGTATACAATTTAGCTCCCTTCAATCCAAATCAAGTACAAAATGGTGAATTAGATCAGGTTTCATATTATTCTCAAAACATAAACCAAACTGCTACTTGTTCTAAAGTTTCACAGGCACAAAACCATATGAAAGACCAGCCGCCAACATTATGA 2466 0.3524 MSTLMQEISKSPSRERENKESEIYDDKLDSNIVCEEEAPRTAMTFSSEEEVTLYYMNYARHMGFGISKISSKNGDEGKKYFTLACSRAGKYVSNPKNVLKPNPITKTQCKARLNACICSDGTVVVSSVILEHNHELSPTKARYFRCNKNLGSHIKRRLELNDQAGINVSRNFRSLVVEANGYENLTFGERDCRNYIDKVRRLRLGTGDADAVQNYFIRMQKQNNQFYYVMDFDDESRLRNVFWADARSRAAYEYFGEAVTFDTTYLTNRYDMPFAPFVGVNHHGQSVLLGCALLSNEDAKTFTWLFTTWLECMHQRAPNAIITDQDKAMKNAIEIVFPKAHHRWCLWHIMKKIPEKFGRHTYYESIKTLLHDVVYDSLSKSVFMEKWERMVESYELHDNEWLKGLFDERHRWVPVYVKDTFWAGMSTTQRSESMNSFFDGYVNSKTSLKQFVEQYDNALKDKIEKESTADFNSFNKVIPCLSHFGFESQFQKAFTNAKFKEFQLEVPAMMYCNTLFEKLDGVNSIFSVMENKKVYDKMKDIEFKVSFNEKDFELQCTCCLFEFKGILCRHILCVLQLSRKTESVPPCYMFSQWRKDIKRKHTLIKCGFDNLTGNAEFQRVGKACDAFYEVASTEIKTEEELLKVMDWIKDLKIELTCKKSSPRIREEDGSIPNQVSSILDPVEARRKGRPREKRKAAKVDQIVKKKLAKKKTQTSQKRKNSQSQEEHEHNDLLSSGNGGINSLAPFDSTQEQNGDVYQCEQRYLWRTEYGTVYNLAPFNPNQVQNGELDQVSYYSQNINQTATCSKVSQAQNHMKDQPPTL* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2618 821 Pfam SWIM zinc finger 547 576 IPR007527 GO:0008270
Tpr6g2618 821 PANTHER OS03G0843700 PROTEIN 13 639 - -
Tpr6g2618 821 SMART 26again6 554 581 IPR006564 GO:0008270
Tpr6g2618 821 MobiDBLite consensus disorder prediction 664 737 - -
Tpr6g2618 821 Pfam FAR1 DNA-binding domain 54 137 IPR004330 -
Tpr6g2618 821 Pfam MULE transposase domain 259 352 IPR018289 -
Tpr6g2618 821 ProSiteProfiles Zinc finger SWIM-type profile. 541 579 IPR007527 GO:0008270
Tpr6g2618 821 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 13 639 IPR031052 GO:0006355
Tpr6g2618 821 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2618 Tpr-Chr6 28584130 28587471 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr6g2618 MULE 7.6e-37 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2618 - - cam:101506732 1059.67