Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2601 ATGGCGAAGATTCACGGATTTAAGCTCGGGAGGCGCCTTGTACAGTTTTCTAGACGTGTCTTTAAAAACAAACGGATCCGACCTGACTATCATCACTTTGGTTGTCTTTCTCGTACTCCAACAATGAAGATTCTCAGGTGGGGCCGTAAGCTCACTGAAGGTGCCATGTCACTTTTTAATAGACCGAGTTATATCCGGTTAGGATCCGACCAAAAATTCAGCGTGCCGAAGGGACACATGGTCGTGTATGTGGGACAGAAAGAAGAAGAGATAATTAGGGTTATGGTGCCGGTGATATACTTTAACCACCCGTTATTCGGTGAATTGCTTAGAGAGGTTGAGGAGGAGTATGGGTTCAACCACCAAGGGGGGATCACGATACCATGCCGGTTCACGGAGTTTGAACGGGTCAAGACATGGATTGCATCAGGATCCGACAATTGCACCGGTCGAAAATTGTATTTGAAGACGTGA 474 0.4662 MAKIHGFKLGRRLVQFSRRVFKNKRIRPDYHHFGCLSRTPTMKILRWGRKLTEGAMSLFNRPSYIRLGSDQKFSVPKGHMVVYVGQKEEEIIRVMVPVIYFNHPLFGELLREVEEEYGFNHQGGITIPCRFTEFERVKTWIASGSDNCTGRKLYLKT* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2601 157 PANTHER SMALL AUXIN-UP RNA-RELATED 1 148 - -
Tpr6g2601 157 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 1 148 IPR003676 GO:0009733
Tpr6g2601 157 Pfam Auxin responsive protein 69 138 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2601 Tpr-Chr6 28456856 28457989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2601 74 134 Calmodulin-binding Proteins AT3G43120 47.541 2.72e-14 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2601 K14488 - mtr:MTR_0388s0020 240.736